Experiment: Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2166 and Shew_2167 are separated by 126 nucleotides Shew_2167 and Shew_2168 are separated by 21 nucleotides Shew_2168 and Shew_2169 are separated by 199 nucleotides Shew_2169 and Shew_2170 are separated by 287 nucleotides
Shew_2166: Shew_2166 - hypothetical protein (RefSeq), at 2,517,223 to 2,521,146
_2166
Shew_2167: Shew_2167 - hypothetical protein (RefSeq), at 2,521,273 to 2,521,473
_2167
Shew_2168: Shew_2168 - hypothetical protein (RefSeq), at 2,521,495 to 2,521,815
_2168
Shew_2169: Shew_2169 - hypothetical protein (RefSeq), at 2,522,015 to 2,522,944
_2169
Shew_2170: Shew_2170 - endonuclease/exonuclease/phosphatase (RefSeq), at 2,523,232 to 2,526,069
_2170
Position (kb)
2522
2523 Strain fitness (log2 ratio)
-2
-1
0
1 at 2521.212 kb on + strand at 2521.306 kb on - strand, within Shew_2167 at 2521.599 kb on + strand, within Shew_2168 at 2521.599 kb on + strand, within Shew_2168 at 2521.705 kb on + strand, within Shew_2168 at 2522.376 kb on + strand, within Shew_2169 at 2522.581 kb on - strand, within Shew_2169 at 2522.754 kb on + strand, within Shew_2169 at 2522.946 kb on + strand at 2523.745 kb on + strand, within Shew_2170 at 2523.893 kb on + strand, within Shew_2170
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM remove 2,521,212 + +0.6 2,521,306 - Shew_2167 0.16 +0.5 2,521,599 + Shew_2168 0.32 -0.1 2,521,599 + Shew_2168 0.32 +0.2 2,521,705 + Shew_2168 0.65 +0.5 2,522,376 + Shew_2169 0.39 -0.6 2,522,581 - Shew_2169 0.61 +0.2 2,522,754 + Shew_2169 0.79 -1.1 2,522,946 + +0.8 2,523,745 + Shew_2170 0.18 -1.9 2,523,893 + Shew_2170 0.23 -0.0
Or see this region's nucleotide sequence