Experiment: Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0785 and Shew_0786 overlap by 26 nucleotides Shew_0786 and Shew_0787 are separated by 218 nucleotides Shew_0787 and Shew_0788 are separated by 114 nucleotides Shew_0788 and Shew_0789 are separated by 89 nucleotides
Shew_0785: Shew_0785 - methyltransferase type 12 (RefSeq), at 898,474 to 899,004
_0785
Shew_0786: Shew_0786 - hypothetical protein (RefSeq), at 898,979 to 899,395
_0786
Shew_0787: Shew_0787 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 899,614 to 900,603
_0787
Shew_0788: Shew_0788 - dienelactone hydrolase (RefSeq), at 900,718 to 901,455
_0788
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Position (kb) 899
900
901 Strain fitness (log2 ratio) -1
0
1
2 at 899.095 kb on + strand, within Shew_0786 at 899.270 kb on - strand, within Shew_0786 at 900.148 kb on - strand, within Shew_0787 at 900.300 kb on + strand, within Shew_0787 at 900.380 kb on + strand, within Shew_0787 at 900.388 kb on - strand, within Shew_0787 at 900.552 kb on - strand at 900.948 kb on - strand, within Shew_0788 at 900.948 kb on - strand, within Shew_0788 at 901.183 kb on + strand, within Shew_0788 at 901.457 kb on - strand at 901.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM remove 899,095 + Shew_0786 0.28 +0.0 899,270 - Shew_0786 0.70 +0.5 900,148 - Shew_0787 0.54 -0.2 900,300 + Shew_0787 0.69 +1.6 900,380 + Shew_0787 0.77 +0.2 900,388 - Shew_0787 0.78 -1.5 900,552 - +0.0 900,948 - Shew_0788 0.31 +2.5 900,948 - Shew_0788 0.31 -0.1 901,183 + Shew_0788 0.63 +0.4 901,457 - -1.2 901,500 - +0.1
Or see this region's nucleotide sequence