Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4202 and Dshi_4203 are separated by 47 nucleotides Dshi_4203 and Dshi_4204 are separated by 66 nucleotides Dshi_4204 and Dshi_4205 overlap by 4 nucleotides
Dshi_4202: Dshi_4202 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 48,070 to 50,451
_4202
Dshi_4203: Dshi_4203 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 50,499 to 51,551
_4203
Dshi_4204: Dshi_4204 - hypothetical protein (RefSeq), at 51,618 to 52,199
_4204
Dshi_4205: Dshi_4205 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 52,196 to 53,524
_4205
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 49.620 kb on + strand, within Dshi_4202 at 49.620 kb on + strand, within Dshi_4202 at 49.962 kb on - strand, within Dshi_4202 at 49.998 kb on + strand, within Dshi_4202 at 50.107 kb on - strand, within Dshi_4202 at 50.324 kb on - strand at 50.366 kb on + strand at 50.516 kb on + strand at 50.632 kb on - strand, within Dshi_4203 at 50.639 kb on + strand, within Dshi_4203 at 50.660 kb on + strand, within Dshi_4203 at 50.678 kb on - strand, within Dshi_4203 at 50.784 kb on + strand, within Dshi_4203 at 50.846 kb on + strand, within Dshi_4203 at 50.890 kb on - strand, within Dshi_4203 at 50.896 kb on - strand, within Dshi_4203 at 50.922 kb on - strand, within Dshi_4203 at 51.164 kb on + strand, within Dshi_4203 at 51.194 kb on + strand, within Dshi_4203 at 51.196 kb on - strand, within Dshi_4203 at 51.372 kb on - strand, within Dshi_4203 at 51.374 kb on + strand, within Dshi_4203 at 51.414 kb on + strand, within Dshi_4203 at 52.064 kb on - strand, within Dshi_4204 at 52.299 kb on + strand at 52.349 kb on - strand, within Dshi_4205 at 52.414 kb on - strand, within Dshi_4205 at 52.425 kb on - strand, within Dshi_4205
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 49,620 + Dshi_4202 0.65 +1.8 49,620 + Dshi_4202 0.65 +0.8 49,962 - Dshi_4202 0.79 -0.2 49,998 + Dshi_4202 0.81 -0.5 50,107 - Dshi_4202 0.86 +0.0 50,324 - -1.8 50,366 + +1.3 50,516 + +1.8 50,632 - Dshi_4203 0.13 -0.4 50,639 + Dshi_4203 0.13 +2.4 50,660 + Dshi_4203 0.15 -2.4 50,678 - Dshi_4203 0.17 -0.8 50,784 + Dshi_4203 0.27 -2.5 50,846 + Dshi_4203 0.33 +1.8 50,890 - Dshi_4203 0.37 +0.8 50,896 - Dshi_4203 0.38 -1.7 50,922 - Dshi_4203 0.40 +1.8 51,164 + Dshi_4203 0.63 +0.8 51,194 + Dshi_4203 0.66 +2.4 51,196 - Dshi_4203 0.66 +2.8 51,372 - Dshi_4203 0.83 +1.1 51,374 + Dshi_4203 0.83 -0.2 51,414 + Dshi_4203 0.87 +0.8 52,064 - Dshi_4204 0.77 +1.4 52,299 + -0.2 52,349 - Dshi_4205 0.12 -0.7 52,414 - Dshi_4205 0.16 -0.4 52,425 - Dshi_4205 0.17 -1.5
Or see this region's nucleotide sequence