Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4147
Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
78,907 | - | Dshi_4146 | 0.48 | +0.5 | |
79,241 | + | Dshi_4146 | 0.72 | -0.8 | |
79,502 | + | +2.3 | |||
79,547 | + | +0.3 | |||
79,623 | + | +1.8 | |||
79,659 | + | -1.3 | |||
79,673 | + | -1.4 | |||
79,782 | + | +0.3 | |||
79,782 | + | -2.5 | |||
79,782 | + | +1.8 | |||
79,816 | - | -1.3 | |||
79,870 | - | -1.5 | |||
79,911 | - | -1.6 | |||
80,070 | + | Dshi_4147 | 0.24 | +0.3 | |
80,108 | - | Dshi_4147 | 0.28 | -2.1 | |
80,216 | - | Dshi_4147 | 0.39 | -0.7 | |
80,297 | - | Dshi_4147 | 0.47 | +0.3 | |
80,676 | - | Dshi_4147 | 0.85 | +0.3 | |
80,780 | + | -2.0 | |||
80,798 | + | +1.3 | |||
80,908 | + | Dshi_4148 | 0.11 | -2.5 | |
80,916 | - | Dshi_4148 | 0.12 | -1.5 | |
80,916 | - | Dshi_4148 | 0.12 | -2.5 | |
80,969 | - | Dshi_4148 | 0.18 | -2.6 | |
81,116 | - | Dshi_4148 | 0.36 | -2.3 | |
81,174 | + | Dshi_4148 | 0.42 | -1.6 | |
81,182 | - | Dshi_4148 | 0.43 | -0.3 | |
81,190 | - | Dshi_4148 | 0.44 | -3.1 | |
81,243 | + | Dshi_4148 | 0.51 | +0.0 | |
81,322 | + | Dshi_4148 | 0.60 | -1.5 | |
81,477 | + | Dshi_4148 | 0.78 | -1.3 | |
81,623 | - | -0.6 | |||
81,641 | + | -1.7 | |||
81,641 | + | +0.7 | |||
81,709 | - | -0.7 | |||
81,740 | - | -1.3 | |||
81,819 | - | -0.7 |
Or see this region's nucleotide sequence