Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4106 and Dshi_4107 are separated by 132 nucleotides Dshi_4107 and Dshi_4108 are separated by 472 nucleotides
Dshi_4106: Dshi_4106 - hypothetical protein (RefSeq), at 35,263 to 36,330
_4106
Dshi_4107: Dshi_4107 - hypothetical protein (RefSeq), at 36,463 to 37,227
_4107
Dshi_4108: Dshi_4108 - hypothetical protein (RefSeq), at 37,700 to 37,960
_4108
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 35.528 kb on + strand, within Dshi_4106 at 35.530 kb on + strand, within Dshi_4106 at 35.559 kb on + strand, within Dshi_4106 at 35.611 kb on - strand, within Dshi_4106 at 35.763 kb on - strand, within Dshi_4106 at 35.765 kb on + strand, within Dshi_4106 at 35.838 kb on - strand, within Dshi_4106 at 36.059 kb on + strand, within Dshi_4106 at 36.083 kb on + strand, within Dshi_4106 at 36.085 kb on + strand, within Dshi_4106 at 36.100 kb on - strand, within Dshi_4106 at 36.100 kb on - strand, within Dshi_4106 at 36.151 kb on - strand, within Dshi_4106 at 36.184 kb on + strand, within Dshi_4106 at 36.216 kb on + strand, within Dshi_4106 at 36.238 kb on + strand at 36.257 kb on + strand at 36.258 kb on + strand at 36.266 kb on - strand at 36.271 kb on + strand at 36.271 kb on + strand at 36.271 kb on + strand at 36.271 kb on + strand at 36.272 kb on - strand at 36.279 kb on - strand at 36.279 kb on - strand at 36.291 kb on - strand at 36.293 kb on + strand at 36.293 kb on + strand at 36.300 kb on - strand at 36.353 kb on - strand at 36.358 kb on + strand at 36.358 kb on + strand at 36.366 kb on - strand at 36.366 kb on - strand at 36.440 kb on - strand at 36.468 kb on - strand at 36.470 kb on + strand at 36.485 kb on - strand at 36.485 kb on - strand at 36.500 kb on - strand at 36.528 kb on + strand at 36.599 kb on - strand, within Dshi_4107 at 36.636 kb on + strand, within Dshi_4107 at 36.644 kb on - strand, within Dshi_4107 at 36.652 kb on - strand, within Dshi_4107 at 36.654 kb on - strand, within Dshi_4107 at 36.658 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.666 kb on - strand, within Dshi_4107 at 36.671 kb on + strand, within Dshi_4107 at 36.671 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.681 kb on - strand, within Dshi_4107 at 36.689 kb on - strand, within Dshi_4107 at 36.699 kb on + strand, within Dshi_4107 at 36.713 kb on + strand, within Dshi_4107 at 36.725 kb on + strand, within Dshi_4107 at 36.733 kb on - strand, within Dshi_4107 at 36.797 kb on + strand, within Dshi_4107 at 36.797 kb on + strand, within Dshi_4107 at 36.810 kb on - strand, within Dshi_4107 at 36.826 kb on - strand, within Dshi_4107 at 36.831 kb on - strand, within Dshi_4107 at 36.836 kb on - strand, within Dshi_4107 at 36.843 kb on - strand, within Dshi_4107 at 36.844 kb on - strand, within Dshi_4107 at 36.849 kb on - strand, within Dshi_4107 at 36.884 kb on - strand, within Dshi_4107 at 36.903 kb on - strand, within Dshi_4107 at 36.903 kb on - strand, within Dshi_4107 at 36.903 kb on - strand, within Dshi_4107 at 36.924 kb on + strand, within Dshi_4107 at 36.932 kb on - strand, within Dshi_4107 at 36.932 kb on - strand, within Dshi_4107 at 36.932 kb on - strand, within Dshi_4107 at 36.945 kb on - strand, within Dshi_4107 at 36.947 kb on - strand, within Dshi_4107 at 36.962 kb on + strand, within Dshi_4107 at 36.972 kb on + strand, within Dshi_4107 at 36.989 kb on + strand, within Dshi_4107 at 37.004 kb on + strand, within Dshi_4107 at 37.018 kb on + strand, within Dshi_4107 at 37.026 kb on - strand, within Dshi_4107 at 37.037 kb on - strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.047 kb on - strand, within Dshi_4107 at 37.047 kb on - strand, within Dshi_4107 at 37.108 kb on + strand, within Dshi_4107 at 37.153 kb on + strand at 37.153 kb on + strand at 37.190 kb on - strand at 37.230 kb on + strand at 37.230 kb on + strand at 37.235 kb on + strand at 37.245 kb on + strand at 37.245 kb on + strand at 37.284 kb on + strand at 37.332 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.392 kb on + strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.404 kb on + strand at 37.404 kb on + strand at 37.405 kb on - strand at 37.410 kb on - strand at 37.421 kb on + strand at 37.496 kb on + strand at 37.512 kb on + strand at 37.542 kb on + strand at 37.560 kb on - strand at 37.567 kb on - strand at 37.600 kb on - strand at 37.681 kb on - strand at 37.718 kb on - strand at 37.761 kb on - strand, within Dshi_4108 at 37.785 kb on + strand, within Dshi_4108 at 37.908 kb on - strand, within Dshi_4108 at 37.913 kb on + strand, within Dshi_4108 at 37.913 kb on + strand, within Dshi_4108 at 37.916 kb on - strand, within Dshi_4108 at 37.921 kb on - strand, within Dshi_4108 at 37.939 kb on + strand at 37.948 kb on - strand at 37.954 kb on + strand at 37.954 kb on + strand at 37.954 kb on + strand at 37.954 kb on + strand at 37.960 kb on - strand at 37.962 kb on - strand at 37.962 kb on - strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.974 kb on - strand at 37.974 kb on - strand at 37.996 kb on - strand at 38.001 kb on - strand at 38.001 kb on - strand at 38.002 kb on + strand at 38.010 kb on - strand at 38.011 kb on - strand at 38.024 kb on - strand at 38.029 kb on + strand at 38.029 kb on + strand at 38.029 kb on + strand at 38.032 kb on - strand at 38.034 kb on + strand at 38.034 kb on + strand at 38.037 kb on - strand at 38.041 kb on + strand at 38.042 kb on - strand at 38.064 kb on + strand at 38.066 kb on + strand at 38.066 kb on + strand at 38.066 kb on + strand at 38.066 kb on - strand at 38.072 kb on - strand at 38.074 kb on - strand at 38.074 kb on - strand at 38.082 kb on + strand at 38.101 kb on + strand at 38.111 kb on + strand at 38.111 kb on + strand at 38.111 kb on + strand at 38.111 kb on + strand at 38.119 kb on - strand at 38.119 kb on - strand at 38.119 kb on - strand at 38.119 kb on - strand at 38.120 kb on + strand at 38.131 kb on + strand at 38.136 kb on + strand at 38.180 kb on - strand at 38.198 kb on - strand at 38.205 kb on + strand at 38.205 kb on + strand at 38.217 kb on + strand at 38.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 35,528 + Dshi_4106 0.25 +2.1 35,530 + Dshi_4106 0.25 -0.1 35,559 + Dshi_4106 0.28 +0.1 35,611 - Dshi_4106 0.33 +0.0 35,763 - Dshi_4106 0.47 +0.0 35,765 + Dshi_4106 0.47 +0.0 35,838 - Dshi_4106 0.54 +0.1 36,059 + Dshi_4106 0.75 -0.1 36,083 + Dshi_4106 0.77 -3.3 36,085 + Dshi_4106 0.77 +0.8 36,100 - Dshi_4106 0.78 +0.1 36,100 - Dshi_4106 0.78 +1.3 36,151 - Dshi_4106 0.83 -0.6 36,184 + Dshi_4106 0.86 +1.0 36,216 + Dshi_4106 0.89 +2.1 36,238 + +0.1 36,257 + +1.8 36,258 + -0.7 36,266 - -0.8 36,271 + -0.6 36,271 + +1.6 36,271 + -0.8 36,271 + +0.1 36,272 - +0.3 36,279 - -1.0 36,279 - -0.4 36,291 - +0.3 36,293 + -0.5 36,293 + -0.1 36,300 - +1.5 36,353 - +0.2 36,358 + -1.0 36,358 + +0.5 36,366 - +0.3 36,366 - -0.3 36,440 - -0.0 36,468 - -0.2 36,470 + +0.3 36,485 - -0.3 36,485 - -1.0 36,500 - -0.1 36,528 + +3.3 36,599 - Dshi_4107 0.18 -2.5 36,636 + Dshi_4107 0.23 -2.1 36,644 - Dshi_4107 0.24 -0.1 36,652 - Dshi_4107 0.25 -1.9 36,654 - Dshi_4107 0.25 -0.7 36,658 + Dshi_4107 0.25 +0.6 36,663 + Dshi_4107 0.26 -0.5 36,663 + Dshi_4107 0.26 -0.4 36,663 + Dshi_4107 0.26 -1.0 36,663 + Dshi_4107 0.26 -0.5 36,663 + Dshi_4107 0.26 -0.2 36,665 + Dshi_4107 0.26 -1.0 36,665 + Dshi_4107 0.26 -0.9 36,665 + Dshi_4107 0.26 +0.6 36,665 + Dshi_4107 0.26 -0.6 36,666 - Dshi_4107 0.27 +0.7 36,671 + Dshi_4107 0.27 +0.6 36,671 - Dshi_4107 0.27 -0.8 36,673 - Dshi_4107 0.27 -0.7 36,673 - Dshi_4107 0.27 +2.8 36,673 - Dshi_4107 0.27 +2.2 36,673 - Dshi_4107 0.27 +0.7 36,673 - Dshi_4107 0.27 -0.3 36,673 - Dshi_4107 0.27 -0.5 36,681 - Dshi_4107 0.28 +0.4 36,689 - Dshi_4107 0.30 -0.7 36,699 + Dshi_4107 0.31 +0.6 36,713 + Dshi_4107 0.33 -0.3 36,725 + Dshi_4107 0.34 +0.2 36,733 - Dshi_4107 0.35 -0.7 36,797 + Dshi_4107 0.44 +0.0 36,797 + Dshi_4107 0.44 -1.4 36,810 - Dshi_4107 0.45 -0.1 36,826 - Dshi_4107 0.47 -1.3 36,831 - Dshi_4107 0.48 +0.3 36,836 - Dshi_4107 0.49 -0.9 36,843 - Dshi_4107 0.50 +1.2 36,844 - Dshi_4107 0.50 +0.0 36,849 - Dshi_4107 0.50 -0.5 36,884 - Dshi_4107 0.55 +0.2 36,903 - Dshi_4107 0.58 +0.3 36,903 - Dshi_4107 0.58 -0.9 36,903 - Dshi_4107 0.58 +0.9 36,924 + Dshi_4107 0.60 +0.2 36,932 - Dshi_4107 0.61 +0.1 36,932 - Dshi_4107 0.61 +1.1 36,932 - Dshi_4107 0.61 +0.0 36,945 - Dshi_4107 0.63 -0.6 36,947 - Dshi_4107 0.63 +2.7 36,962 + Dshi_4107 0.65 +1.0 36,972 + Dshi_4107 0.67 -0.6 36,989 + Dshi_4107 0.69 +0.0 37,004 + Dshi_4107 0.71 +0.8 37,018 + Dshi_4107 0.73 -0.7 37,026 - Dshi_4107 0.74 -2.4 37,037 - Dshi_4107 0.75 -0.2 37,039 + Dshi_4107 0.75 +0.8 37,039 + Dshi_4107 0.75 +0.9 37,039 + Dshi_4107 0.75 +0.6 37,039 + Dshi_4107 0.75 +2.8 37,039 + Dshi_4107 0.75 +3.7 37,047 - Dshi_4107 0.76 +3.4 37,047 - Dshi_4107 0.76 +0.4 37,108 + Dshi_4107 0.84 +3.1 37,153 + -0.1 37,153 + -0.3 37,190 - +2.3 37,230 + -0.9 37,230 + -0.1 37,235 + -0.0 37,245 + +1.1 37,245 + +0.5 37,284 + +0.6 37,332 + +0.0 37,385 + -0.1 37,385 + +2.9 37,385 + -1.3 37,385 + -1.1 37,385 + -0.6 37,392 + -0.1 37,393 - +1.4 37,393 - -0.9 37,393 - +0.8 37,393 - +1.3 37,393 - +2.6 37,393 - -1.3 37,404 + +2.0 37,404 + +1.3 37,405 - +0.6 37,410 - +1.2 37,421 + +2.6 37,496 + -0.9 37,512 + +0.8 37,542 + -1.2 37,560 - +1.7 37,567 - -0.6 37,600 - -0.5 37,681 - +1.8 37,718 - -0.5 37,761 - Dshi_4108 0.23 -0.9 37,785 + Dshi_4108 0.33 +0.4 37,908 - Dshi_4108 0.80 -1.0 37,913 + Dshi_4108 0.82 +1.1 37,913 + Dshi_4108 0.82 -1.6 37,916 - Dshi_4108 0.83 +0.0 37,921 - Dshi_4108 0.85 +1.7 37,939 + +1.8 37,948 - +1.2 37,954 + -2.1 37,954 + -0.8 37,954 + -0.5 37,954 + +0.4 37,960 - -0.5 37,962 - -0.6 37,962 - +0.1 37,966 + +1.4 37,966 + +0.2 37,974 - -1.0 37,974 - -0.2 37,996 - +3.2 38,001 - -0.7 38,001 - -2.1 38,002 + -0.6 38,010 - +0.6 38,011 - +0.3 38,024 - +0.8 38,029 + +1.0 38,029 + -0.5 38,029 + +0.7 38,032 - -3.0 38,034 + -3.3 38,034 + -0.2 38,037 - -0.2 38,041 + -0.8 38,042 - -0.1 38,064 + -0.8 38,066 + +0.8 38,066 + -0.4 38,066 + -0.0 38,066 - +0.3 38,072 - -0.1 38,074 - -0.1 38,074 - +0.4 38,082 + -0.1 38,101 + -0.3 38,111 + -0.7 38,111 + +0.9 38,111 + +0.9 38,111 + -1.2 38,119 - +0.8 38,119 - -1.3 38,119 - -0.1 38,119 - +2.1 38,120 + -1.1 38,131 + +1.1 38,136 + +3.1 38,180 - -0.4 38,198 - -0.2 38,205 + +0.6 38,205 + -0.3 38,217 + +0.4 38,223 + +1.1
Or see this region's nucleotide sequence