Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4104

Experiment: m.b. A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_4103 and Dshi_4104 are separated by 88 nucleotidesDshi_4104 and Dshi_4105 are separated by 134 nucleotides Dshi_4103: Dshi_4103 - parB-like partition protein (RefSeq), at 31,914 to 32,738 _4103 Dshi_4104: Dshi_4104 - Cobyrinic acid ac-diamide synthase (RefSeq), at 32,827 to 34,020 _4104 Dshi_4105: Dshi_4105 - Resolvase domain (RefSeq), at 34,155 to 35,036 _4105 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1at 34.145 kb on + strandat 34.191 kb on + strandat 34.374 kb on - strand, within Dshi_4105at 34.395 kb on + strand, within Dshi_4105at 34.524 kb on - strand, within Dshi_4105at 34.650 kb on + strand, within Dshi_4105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
remove
34,145 + -2.4
34,191 + -0.3
34,374 - Dshi_4105 0.25 +0.7
34,395 + Dshi_4105 0.27 +0.3
34,524 - Dshi_4105 0.42 +0.4
34,650 + Dshi_4105 0.56 +0.1

Or see this region's nucleotide sequence