Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4081 and Dshi_4082 are separated by 138 nucleotides Dshi_4082 and Dshi_4083 overlap by 4 nucleotides Dshi_4083 and Dshi_4084 are separated by 122 nucleotides
Dshi_4081: Dshi_4081 - Resolvase domain (RefSeq), at 16,240 to 16,839
_4081
Dshi_4082: Dshi_4082 - Integrase catalytic region (RefSeq), at 16,978 to 18,471
_4082
Dshi_4083: Dshi_4083 - ATP-binding protein (RefSeq), at 18,468 to 19,292
_4083
Dshi_4084: Dshi_4084 - Resolvase domain (RefSeq), at 19,415 to 19,981
_4084
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -1
0
1
2
3 at 19.324 kb on + strand at 19.324 kb on + strand at 19.334 kb on + strand at 19.337 kb on + strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.342 kb on - strand at 19.342 kb on - strand at 19.347 kb on - strand at 19.419 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.426 kb on - strand at 19.427 kb on - strand at 19.428 kb on - strand at 19.453 kb on + strand at 19.453 kb on + strand at 19.461 kb on - strand at 19.461 kb on - strand at 19.461 kb on - strand at 19.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 19,324 + -0.7 19,324 + +3.1 19,334 + -0.4 19,337 + -0.3 19,339 + -1.0 19,339 + +1.8 19,342 - -0.3 19,342 - +0.3 19,347 - +1.3 19,419 + -1.7 19,420 + -1.0 19,420 + +2.4 19,426 - +2.9 19,427 - +1.8 19,428 - +1.0 19,453 + +0.4 19,453 + +0.7 19,461 - -0.1 19,461 - -0.5 19,461 - -0.7 19,466 - -0.4
Or see this region's nucleotide sequence