Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3835

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3834 and Dshi_3835 overlap by 26 nucleotidesDshi_3835 and Dshi_3836 overlap by 4 nucleotidesDshi_3836 and Dshi_3837 are separated by 136 nucleotides Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907 _3834 Dshi_3835: Dshi_3835 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 44,882 to 45,445 _3835 Dshi_3836: Dshi_3836 - hypothetical protein (RefSeq), at 45,442 to 45,621 _3836 Dshi_3837: Dshi_3837 - response regulator receiver and SARP domain protein (RefSeq), at 45,758 to 46,573 _3837 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 44.003 kb on - strand, within Dshi_3834at 44.024 kb on - strand, within Dshi_3834at 44.128 kb on - strand, within Dshi_3834at 44.138 kb on + strand, within Dshi_3834at 44.208 kb on - strand, within Dshi_3834at 44.251 kb on - strand, within Dshi_3834at 44.256 kb on + strand, within Dshi_3834at 44.267 kb on + strand, within Dshi_3834at 44.280 kb on - strand, within Dshi_3834at 44.295 kb on - strand, within Dshi_3834at 44.365 kb on - strand, within Dshi_3834at 44.446 kb on - strand, within Dshi_3834at 44.480 kb on + strand, within Dshi_3834at 44.542 kb on + strand, within Dshi_3834at 44.551 kb on - strand, within Dshi_3834at 44.715 kb on - strand, within Dshi_3834at 44.715 kb on - strand, within Dshi_3834at 44.715 kb on - strand, within Dshi_3834at 44.752 kb on + strandat 44.879 kb on + strandat 44.879 kb on + strandat 44.917 kb on + strandat 44.958 kb on + strand, within Dshi_3835at 44.985 kb on - strand, within Dshi_3835at 45.255 kb on + strand, within Dshi_3835at 45.258 kb on - strand, within Dshi_3835at 45.312 kb on + strand, within Dshi_3835at 45.320 kb on - strand, within Dshi_3835at 45.320 kb on - strand, within Dshi_3835at 45.321 kb on + strand, within Dshi_3835at 45.426 kb on + strandat 45.519 kb on - strand, within Dshi_3836at 45.534 kb on - strand, within Dshi_3836at 45.545 kb on - strand, within Dshi_3836at 45.623 kb on - strandat 45.623 kb on - strandat 45.624 kb on - strandat 45.664 kb on - strandat 45.759 kb on + strandat 45.771 kb on + strandat 45.801 kb on - strandat 45.857 kb on + strand, within Dshi_3837at 45.870 kb on - strand, within Dshi_3837at 45.935 kb on - strand, within Dshi_3837at 45.980 kb on - strand, within Dshi_3837at 46.026 kb on - strand, within Dshi_3837at 46.026 kb on - strand, within Dshi_3837at 46.033 kb on - strand, within Dshi_3837at 46.085 kb on + strand, within Dshi_3837at 46.093 kb on - strand, within Dshi_3837at 46.297 kb on - strand, within Dshi_3837at 46.374 kb on - strand, within Dshi_3837at 46.437 kb on - strand, within Dshi_3837

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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44,003 - Dshi_3834 0.48 -0.6
44,024 - Dshi_3834 0.49 -2.0
44,128 - Dshi_3834 0.55 -1.6
44,138 + Dshi_3834 0.56 -2.0
44,208 - Dshi_3834 0.60 +0.1
44,251 - Dshi_3834 0.62 -0.3
44,256 + Dshi_3834 0.62 -2.5
44,267 + Dshi_3834 0.63 -0.3
44,280 - Dshi_3834 0.64 +0.3
44,295 - Dshi_3834 0.65 +2.5
44,365 - Dshi_3834 0.69 -0.9
44,446 - Dshi_3834 0.73 -2.3
44,480 + Dshi_3834 0.75 -0.4
44,542 + Dshi_3834 0.79 -1.1
44,551 - Dshi_3834 0.79 -2.1
44,715 - Dshi_3834 0.89 -0.2
44,715 - Dshi_3834 0.89 +1.3
44,715 - Dshi_3834 0.89 -1.6
44,752 + -2.6
44,879 + -0.9
44,879 + +0.6
44,917 + -0.2
44,958 + Dshi_3835 0.13 -0.3
44,985 - Dshi_3835 0.18 -2.6
45,255 + Dshi_3835 0.66 -0.7
45,258 - Dshi_3835 0.67 +0.4
45,312 + Dshi_3835 0.76 -0.9
45,320 - Dshi_3835 0.78 -2.3
45,320 - Dshi_3835 0.78 -0.5
45,321 + Dshi_3835 0.78 +1.7
45,426 + -0.3
45,519 - Dshi_3836 0.43 +0.7
45,534 - Dshi_3836 0.51 -1.3
45,545 - Dshi_3836 0.57 +0.7
45,623 - +0.7
45,623 - -0.4
45,624 - -1.4
45,664 - +0.2
45,759 + -2.3
45,771 + +2.3
45,801 - -1.8
45,857 + Dshi_3837 0.12 +0.1
45,870 - Dshi_3837 0.14 +0.2
45,935 - Dshi_3837 0.22 +4.2
45,980 - Dshi_3837 0.27 -1.5
46,026 - Dshi_3837 0.33 -0.9
46,026 - Dshi_3837 0.33 -0.9
46,033 - Dshi_3837 0.34 -1.6
46,085 + Dshi_3837 0.40 -1.6
46,093 - Dshi_3837 0.41 +0.7
46,297 - Dshi_3837 0.66 +0.0
46,374 - Dshi_3837 0.75 -0.7
46,437 - Dshi_3837 0.83 -1.3

Or see this region's nucleotide sequence