Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3802

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3801 and Dshi_3802 are separated by 113 nucleotidesDshi_3802 and Dshi_3803 are separated by 57 nucleotidesDshi_3803 and Dshi_3804 overlap by 26 nucleotides Dshi_3801: Dshi_3801 - catalase/peroxidase HPI (RefSeq), at 8,358 to 10,535 _3801 Dshi_3802: Dshi_3802 - transcriptional regulator, LysR family (RefSeq), at 10,649 to 11,578 _3802 Dshi_3803: Dshi_3803 - hypothetical protein (RefSeq), at 11,636 to 11,827 _3803 Dshi_3804: Dshi_3804 - transcriptional regulator, LuxR family (RefSeq), at 11,802 to 12,791 _3804 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 9.755 kb on - strand, within Dshi_3801at 9.814 kb on + strand, within Dshi_3801at 9.843 kb on - strand, within Dshi_3801at 9.845 kb on - strand, within Dshi_3801at 9.861 kb on + strand, within Dshi_3801at 9.861 kb on + strandat 9.861 kb on + strand, within Dshi_3801at 9.864 kb on - strand, within Dshi_3801at 9.869 kb on - strand, within Dshi_3801at 10.114 kb on + strand, within Dshi_3801at 10.164 kb on - strand, within Dshi_3801at 10.167 kb on - strand, within Dshi_3801at 10.185 kb on - strand, within Dshi_3801at 10.264 kb on + strand, within Dshi_3801at 10.270 kb on - strand, within Dshi_3801at 10.272 kb on - strand, within Dshi_3801at 10.414 kb on - strandat 10.415 kb on + strandat 10.547 kb on - strandat 10.585 kb on + strandat 10.589 kb on - strandat 10.670 kb on - strandat 10.678 kb on - strandat 10.696 kb on - strandat 10.799 kb on + strand, within Dshi_3802at 10.833 kb on + strand, within Dshi_3802at 10.975 kb on + strand, within Dshi_3802at 10.992 kb on + strand, within Dshi_3802at 11.090 kb on + strand, within Dshi_3802at 11.205 kb on + strand, within Dshi_3802at 11.223 kb on - strand, within Dshi_3802at 11.260 kb on + strand, within Dshi_3802at 11.269 kb on - strand, within Dshi_3802at 11.321 kb on + strand, within Dshi_3802at 11.329 kb on - strand, within Dshi_3802at 11.358 kb on - strand, within Dshi_3802at 11.397 kb on - strand, within Dshi_3802at 11.516 kb on - strandat 11.638 kb on - strandat 11.716 kb on - strand, within Dshi_3803at 11.764 kb on + strand, within Dshi_3803at 11.785 kb on + strand, within Dshi_3803at 11.829 kb on - strandat 11.917 kb on - strand, within Dshi_3804at 11.967 kb on + strand, within Dshi_3804at 11.982 kb on + strand, within Dshi_3804at 11.992 kb on + strand, within Dshi_3804at 12.051 kb on + strand, within Dshi_3804at 12.139 kb on - strand, within Dshi_3804at 12.196 kb on + strand, within Dshi_3804at 12.322 kb on + strand, within Dshi_3804at 12.393 kb on + strand, within Dshi_3804at 12.463 kb on + strand, within Dshi_3804at 12.513 kb on - strand, within Dshi_3804at 12.568 kb on - strand, within Dshi_3804

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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9,755 - Dshi_3801 0.64 +3.2
9,814 + Dshi_3801 0.67 -2.4
9,843 - Dshi_3801 0.68 -1.6
9,845 - Dshi_3801 0.68 +0.1
9,861 + Dshi_3801 0.69 +1.3
9,861 + +2.3
9,861 + Dshi_3801 0.69 -1.2
9,864 - Dshi_3801 0.69 +0.1
9,869 - Dshi_3801 0.69 -1.6
10,114 + Dshi_3801 0.81 +0.0
10,164 - Dshi_3801 0.83 -0.0
10,167 - Dshi_3801 0.83 -0.6
10,185 - Dshi_3801 0.84 -0.8
10,264 + Dshi_3801 0.88 +2.0
10,270 - Dshi_3801 0.88 +1.4
10,272 - Dshi_3801 0.88 +0.1
10,414 - -1.0
10,415 + -0.6
10,547 - -1.5
10,585 + +2.7
10,589 - -0.9
10,670 - +0.9
10,678 - +1.8
10,696 - -0.2
10,799 + Dshi_3802 0.16 +0.9
10,833 + Dshi_3802 0.20 -0.5
10,975 + Dshi_3802 0.35 +0.7
10,992 + Dshi_3802 0.37 -0.1
11,090 + Dshi_3802 0.47 +0.7
11,205 + Dshi_3802 0.60 +1.5
11,223 - Dshi_3802 0.62 +0.7
11,260 + Dshi_3802 0.66 +0.1
11,269 - Dshi_3802 0.67 +0.1
11,321 + Dshi_3802 0.72 -1.6
11,329 - Dshi_3802 0.73 +0.7
11,358 - Dshi_3802 0.76 +0.0
11,397 - Dshi_3802 0.80 -1.8
11,516 - +0.9
11,638 - +0.3
11,716 - Dshi_3803 0.42 +0.2
11,764 + Dshi_3803 0.67 +0.7
11,785 + Dshi_3803 0.78 +0.7
11,829 - -0.4
11,917 - Dshi_3804 0.12 -0.9
11,967 + Dshi_3804 0.17 -1.9
11,982 + Dshi_3804 0.18 -1.6
11,992 + Dshi_3804 0.19 +2.7
12,051 + Dshi_3804 0.25 +1.7
12,139 - Dshi_3804 0.34 -0.1
12,196 + Dshi_3804 0.40 +1.7
12,322 + Dshi_3804 0.53 -2.2
12,393 + Dshi_3804 0.60 +1.7
12,463 + Dshi_3804 0.67 +0.1
12,513 - Dshi_3804 0.72 +3.9
12,568 - Dshi_3804 0.77 +0.0

Or see this region's nucleotide sequence