Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3801 and Dshi_3802 are separated by 113 nucleotides Dshi_3802 and Dshi_3803 are separated by 57 nucleotides Dshi_3803 and Dshi_3804 overlap by 26 nucleotides
Dshi_3801: Dshi_3801 - catalase/peroxidase HPI (RefSeq), at 8,358 to 10,535
_3801
Dshi_3802: Dshi_3802 - transcriptional regulator, LysR family (RefSeq), at 10,649 to 11,578
_3802
Dshi_3803: Dshi_3803 - hypothetical protein (RefSeq), at 11,636 to 11,827
_3803
Dshi_3804: Dshi_3804 - transcriptional regulator, LuxR family (RefSeq), at 11,802 to 12,791
_3804
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 9.755 kb on - strand, within Dshi_3801 at 9.814 kb on + strand, within Dshi_3801 at 9.843 kb on - strand, within Dshi_3801 at 9.845 kb on - strand, within Dshi_3801 at 9.861 kb on + strand, within Dshi_3801 at 9.861 kb on + strand at 9.861 kb on + strand, within Dshi_3801 at 9.864 kb on - strand, within Dshi_3801 at 9.869 kb on - strand, within Dshi_3801 at 10.114 kb on + strand, within Dshi_3801 at 10.164 kb on - strand, within Dshi_3801 at 10.167 kb on - strand, within Dshi_3801 at 10.185 kb on - strand, within Dshi_3801 at 10.264 kb on + strand, within Dshi_3801 at 10.270 kb on - strand, within Dshi_3801 at 10.272 kb on - strand, within Dshi_3801 at 10.414 kb on - strand at 10.415 kb on + strand at 10.547 kb on - strand at 10.585 kb on + strand at 10.589 kb on - strand at 10.670 kb on - strand at 10.678 kb on - strand at 10.696 kb on - strand at 10.799 kb on + strand, within Dshi_3802 at 10.833 kb on + strand, within Dshi_3802 at 10.975 kb on + strand, within Dshi_3802 at 10.992 kb on + strand, within Dshi_3802 at 11.090 kb on + strand, within Dshi_3802 at 11.205 kb on + strand, within Dshi_3802 at 11.223 kb on - strand, within Dshi_3802 at 11.260 kb on + strand, within Dshi_3802 at 11.269 kb on - strand, within Dshi_3802 at 11.321 kb on + strand, within Dshi_3802 at 11.329 kb on - strand, within Dshi_3802 at 11.358 kb on - strand, within Dshi_3802 at 11.397 kb on - strand, within Dshi_3802 at 11.516 kb on - strand at 11.638 kb on - strand at 11.716 kb on - strand, within Dshi_3803 at 11.764 kb on + strand, within Dshi_3803 at 11.785 kb on + strand, within Dshi_3803 at 11.829 kb on - strand at 11.917 kb on - strand, within Dshi_3804 at 11.967 kb on + strand, within Dshi_3804 at 11.982 kb on + strand, within Dshi_3804 at 11.992 kb on + strand, within Dshi_3804 at 12.051 kb on + strand, within Dshi_3804 at 12.139 kb on - strand, within Dshi_3804 at 12.196 kb on + strand, within Dshi_3804 at 12.322 kb on + strand, within Dshi_3804 at 12.393 kb on + strand, within Dshi_3804 at 12.463 kb on + strand, within Dshi_3804 at 12.513 kb on - strand, within Dshi_3804 at 12.568 kb on - strand, within Dshi_3804
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 9,755 - Dshi_3801 0.64 +3.2 9,814 + Dshi_3801 0.67 -2.4 9,843 - Dshi_3801 0.68 -1.6 9,845 - Dshi_3801 0.68 +0.1 9,861 + Dshi_3801 0.69 +1.3 9,861 + +2.3 9,861 + Dshi_3801 0.69 -1.2 9,864 - Dshi_3801 0.69 +0.1 9,869 - Dshi_3801 0.69 -1.6 10,114 + Dshi_3801 0.81 +0.0 10,164 - Dshi_3801 0.83 -0.0 10,167 - Dshi_3801 0.83 -0.6 10,185 - Dshi_3801 0.84 -0.8 10,264 + Dshi_3801 0.88 +2.0 10,270 - Dshi_3801 0.88 +1.4 10,272 - Dshi_3801 0.88 +0.1 10,414 - -1.0 10,415 + -0.6 10,547 - -1.5 10,585 + +2.7 10,589 - -0.9 10,670 - +0.9 10,678 - +1.8 10,696 - -0.2 10,799 + Dshi_3802 0.16 +0.9 10,833 + Dshi_3802 0.20 -0.5 10,975 + Dshi_3802 0.35 +0.7 10,992 + Dshi_3802 0.37 -0.1 11,090 + Dshi_3802 0.47 +0.7 11,205 + Dshi_3802 0.60 +1.5 11,223 - Dshi_3802 0.62 +0.7 11,260 + Dshi_3802 0.66 +0.1 11,269 - Dshi_3802 0.67 +0.1 11,321 + Dshi_3802 0.72 -1.6 11,329 - Dshi_3802 0.73 +0.7 11,358 - Dshi_3802 0.76 +0.0 11,397 - Dshi_3802 0.80 -1.8 11,516 - +0.9 11,638 - +0.3 11,716 - Dshi_3803 0.42 +0.2 11,764 + Dshi_3803 0.67 +0.7 11,785 + Dshi_3803 0.78 +0.7 11,829 - -0.4 11,917 - Dshi_3804 0.12 -0.9 11,967 + Dshi_3804 0.17 -1.9 11,982 + Dshi_3804 0.18 -1.6 11,992 + Dshi_3804 0.19 +2.7 12,051 + Dshi_3804 0.25 +1.7 12,139 - Dshi_3804 0.34 -0.1 12,196 + Dshi_3804 0.40 +1.7 12,322 + Dshi_3804 0.53 -2.2 12,393 + Dshi_3804 0.60 +1.7 12,463 + Dshi_3804 0.67 +0.1 12,513 - Dshi_3804 0.72 +3.9 12,568 - Dshi_3804 0.77 +0.0
Or see this region's nucleotide sequence