Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3798 and Dshi_3799 are separated by 125 nucleotides Dshi_3799 and Dshi_3800 are separated by 4 nucleotides Dshi_3800 and Dshi_3801 are separated by 58 nucleotides
Dshi_3798: Dshi_3798 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq), at 6,416 to 6,958
_3798
Dshi_3799: Dshi_3799 - HupE/UreJ protein (RefSeq), at 7,084 to 7,680
_3799
Dshi_3800: Dshi_3800 - hypothetical protein (RefSeq), at 7,685 to 8,299
_3800
Dshi_3801: Dshi_3801 - catalase/peroxidase HPI (RefSeq), at 8,358 to 10,535
_3801
Position (kb)
7
8
9 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6.761 kb on - strand, within Dshi_3798 at 6.909 kb on - strand at 6.914 kb on - strand at 6.965 kb on + strand at 7.195 kb on + strand, within Dshi_3799 at 7.251 kb on + strand, within Dshi_3799 at 7.393 kb on + strand, within Dshi_3799 at 7.633 kb on - strand at 7.690 kb on - strand at 7.874 kb on - strand, within Dshi_3800 at 8.039 kb on + strand, within Dshi_3800 at 8.043 kb on + strand, within Dshi_3800 at 8.238 kb on - strand at 8.377 kb on - strand at 8.457 kb on - strand at 8.515 kb on + strand at 8.599 kb on - strand, within Dshi_3801 at 8.612 kb on + strand, within Dshi_3801 at 8.890 kb on + strand, within Dshi_3801 at 9.092 kb on + strand, within Dshi_3801 at 9.100 kb on - strand, within Dshi_3801 at 9.100 kb on - strand, within Dshi_3801 at 9.169 kb on + strand, within Dshi_3801 at 9.169 kb on + strand, within Dshi_3801 at 9.229 kb on - strand, within Dshi_3801 at 9.234 kb on - strand, within Dshi_3801 at 9.264 kb on - strand, within Dshi_3801
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 6,761 - Dshi_3798 0.64 -0.5 6,909 - -0.6 6,914 - -1.4 6,965 + -0.9 7,195 + Dshi_3799 0.19 -2.2 7,251 + Dshi_3799 0.28 -1.5 7,393 + Dshi_3799 0.52 -1.9 7,633 - -0.9 7,690 - -0.5 7,874 - Dshi_3800 0.31 +1.7 8,039 + Dshi_3800 0.58 -1.3 8,043 + Dshi_3800 0.58 +0.3 8,238 - -0.9 8,377 - -2.9 8,457 - +0.1 8,515 + -0.7 8,599 - Dshi_3801 0.11 +0.7 8,612 + Dshi_3801 0.12 -1.1 8,890 + Dshi_3801 0.24 -0.8 9,092 + Dshi_3801 0.34 +0.8 9,100 - Dshi_3801 0.34 -0.5 9,100 - Dshi_3801 0.34 +2.3 9,169 + Dshi_3801 0.37 +0.7 9,169 + Dshi_3801 0.37 -0.5 9,229 - Dshi_3801 0.40 +1.0 9,234 - Dshi_3801 0.40 -0.9 9,264 - Dshi_3801 0.42 -1.9
Or see this region's nucleotide sequence