Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3720

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3719 and Dshi_3720 overlap by 4 nucleotidesDshi_3720 and Dshi_3721 overlap by 13 nucleotidesDshi_3721 and Dshi_3722 overlap by 8 nucleotides Dshi_3719: Dshi_3719 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 124,654 to 127,605 _3719 Dshi_3720: Dshi_3720 - molybdopterin dehydrogenase FAD-binding (RefSeq), at 127,602 to 128,429 _3720 Dshi_3721: Dshi_3721 - (2Fe-2S)-binding domain protein (RefSeq), at 128,417 to 128,926 _3721 Dshi_3722: Dshi_3722 - AMP-dependent synthetase and ligase (RefSeq), at 128,919 to 130,454 _3722 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 126.670 kb on + strand, within Dshi_3719at 126.732 kb on + strand, within Dshi_3719at 126.732 kb on + strand, within Dshi_3719at 126.753 kb on + strand, within Dshi_3719at 126.761 kb on + strand, within Dshi_3719at 126.761 kb on - strand, within Dshi_3719at 126.761 kb on - strand, within Dshi_3719at 126.778 kb on + strand, within Dshi_3719at 126.832 kb on + strand, within Dshi_3719at 126.878 kb on + strand, within Dshi_3719at 126.886 kb on - strand, within Dshi_3719at 126.886 kb on - strand, within Dshi_3719at 126.909 kb on + strand, within Dshi_3719at 126.909 kb on + strand, within Dshi_3719at 126.911 kb on - strand, within Dshi_3719at 126.935 kb on - strand, within Dshi_3719at 126.993 kb on + strand, within Dshi_3719at 127.066 kb on + strand, within Dshi_3719at 127.094 kb on + strand, within Dshi_3719at 127.097 kb on - strand, within Dshi_3719at 127.120 kb on + strand, within Dshi_3719at 127.160 kb on - strand, within Dshi_3719at 127.177 kb on + strand, within Dshi_3719at 127.180 kb on - strand, within Dshi_3719at 127.185 kb on - strand, within Dshi_3719at 127.259 kb on + strand, within Dshi_3719at 127.291 kb on - strand, within Dshi_3719at 127.306 kb on + strand, within Dshi_3719at 127.325 kb on + strandat 127.333 kb on - strandat 127.366 kb on + strandat 127.523 kb on + strandat 127.623 kb on - strandat 127.653 kb on + strandat 127.759 kb on + strand, within Dshi_3720at 127.773 kb on - strand, within Dshi_3720at 127.852 kb on + strand, within Dshi_3720at 127.860 kb on - strand, within Dshi_3720at 127.873 kb on + strand, within Dshi_3720at 127.911 kb on + strand, within Dshi_3720at 127.911 kb on + strand, within Dshi_3720at 127.911 kb on + strand, within Dshi_3720at 127.919 kb on - strand, within Dshi_3720at 128.013 kb on - strand, within Dshi_3720at 128.018 kb on - strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.065 kb on + strand, within Dshi_3720at 128.065 kb on + strand, within Dshi_3720at 128.073 kb on - strand, within Dshi_3720at 128.158 kb on - strand, within Dshi_3720at 128.189 kb on + strand, within Dshi_3720at 128.200 kb on + strand, within Dshi_3720at 128.276 kb on + strand, within Dshi_3720at 128.284 kb on - strand, within Dshi_3720at 128.345 kb on + strand, within Dshi_3720at 128.345 kb on + strand, within Dshi_3720at 128.400 kb on - strandat 128.462 kb on - strandat 128.462 kb on - strandat 128.462 kb on - strandat 128.490 kb on - strand, within Dshi_3721at 128.527 kb on + strand, within Dshi_3721at 128.663 kb on + strand, within Dshi_3721at 128.669 kb on + strand, within Dshi_3721at 128.669 kb on + strand, within Dshi_3721at 128.671 kb on - strand, within Dshi_3721at 128.782 kb on + strand, within Dshi_3721at 128.891 kb on + strandat 128.906 kb on - strandat 128.906 kb on - strandat 128.909 kb on + strandat 128.997 kb on + strandat 129.047 kb on - strandat 129.060 kb on + strandat 129.090 kb on + strand, within Dshi_3722at 129.123 kb on + strand, within Dshi_3722at 129.130 kb on - strand, within Dshi_3722at 129.206 kb on + strand, within Dshi_3722at 129.214 kb on - strand, within Dshi_3722at 129.238 kb on + strand, within Dshi_3722at 129.246 kb on - strand, within Dshi_3722at 129.281 kb on - strand, within Dshi_3722at 129.281 kb on - strand, within Dshi_3722at 129.327 kb on - strand, within Dshi_3722at 129.358 kb on + strand, within Dshi_3722at 129.366 kb on - strand, within Dshi_3722at 129.373 kb on - strand, within Dshi_3722at 129.385 kb on - strand, within Dshi_3722at 129.419 kb on + strand, within Dshi_3722at 129.419 kb on + strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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126,670 + Dshi_3719 0.68 -0.7
126,732 + Dshi_3719 0.70 -0.9
126,732 + Dshi_3719 0.70 -1.5
126,753 + Dshi_3719 0.71 +1.1
126,761 + Dshi_3719 0.71 +1.8
126,761 - Dshi_3719 0.71 -0.2
126,761 - Dshi_3719 0.71 -0.8
126,778 + Dshi_3719 0.72 -0.3
126,832 + Dshi_3719 0.74 +0.5
126,878 + Dshi_3719 0.75 -1.3
126,886 - Dshi_3719 0.76 -0.0
126,886 - Dshi_3719 0.76 +3.0
126,909 + Dshi_3719 0.76 +0.3
126,909 + Dshi_3719 0.76 -0.1
126,911 - Dshi_3719 0.76 -0.4
126,935 - Dshi_3719 0.77 +0.1
126,993 + Dshi_3719 0.79 +0.0
127,066 + Dshi_3719 0.82 -0.6
127,094 + Dshi_3719 0.83 +0.5
127,097 - Dshi_3719 0.83 -0.3
127,120 + Dshi_3719 0.84 -0.3
127,160 - Dshi_3719 0.85 -0.3
127,177 + Dshi_3719 0.85 -1.1
127,180 - Dshi_3719 0.86 +1.0
127,185 - Dshi_3719 0.86 +1.1
127,259 + Dshi_3719 0.88 -0.5
127,291 - Dshi_3719 0.89 +0.3
127,306 + Dshi_3719 0.90 -0.5
127,325 + -1.4
127,333 - +0.2
127,366 + +1.7
127,523 + +0.3
127,623 - +0.4
127,653 + -0.4
127,759 + Dshi_3720 0.19 -2.6
127,773 - Dshi_3720 0.21 +0.1
127,852 + Dshi_3720 0.30 +0.3
127,860 - Dshi_3720 0.31 -0.9
127,873 + Dshi_3720 0.33 -3.0
127,911 + Dshi_3720 0.37 +0.1
127,911 + Dshi_3720 0.37 -1.2
127,911 + Dshi_3720 0.37 -0.4
127,919 - Dshi_3720 0.38 +1.4
128,013 - Dshi_3720 0.50 -0.5
128,018 - Dshi_3720 0.50 -0.5
128,038 + Dshi_3720 0.53 -1.9
128,038 + Dshi_3720 0.53 +0.8
128,038 + Dshi_3720 0.53 -1.1
128,065 + Dshi_3720 0.56 -0.9
128,065 + Dshi_3720 0.56 +1.0
128,073 - Dshi_3720 0.57 -1.0
128,158 - Dshi_3720 0.67 -0.6
128,189 + Dshi_3720 0.71 +0.4
128,200 + Dshi_3720 0.72 -1.9
128,276 + Dshi_3720 0.81 -0.2
128,284 - Dshi_3720 0.82 +2.8
128,345 + Dshi_3720 0.90 -1.0
128,345 + Dshi_3720 0.90 -1.8
128,400 - +0.2
128,462 - +1.3
128,462 - +1.7
128,462 - -1.3
128,490 - Dshi_3721 0.14 -1.0
128,527 + Dshi_3721 0.22 +0.6
128,663 + Dshi_3721 0.48 -0.4
128,669 + Dshi_3721 0.49 -0.4
128,669 + Dshi_3721 0.49 -0.9
128,671 - Dshi_3721 0.50 -0.5
128,782 + Dshi_3721 0.72 -0.1
128,891 + -0.8
128,906 - +1.0
128,906 - -0.4
128,909 + +1.5
128,997 + -1.2
129,047 - -2.1
129,060 + -1.1
129,090 + Dshi_3722 0.11 -0.7
129,123 + Dshi_3722 0.13 -0.7
129,130 - Dshi_3722 0.14 -1.0
129,206 + Dshi_3722 0.19 -1.0
129,214 - Dshi_3722 0.19 -1.1
129,238 + Dshi_3722 0.21 -1.0
129,246 - Dshi_3722 0.21 +0.4
129,281 - Dshi_3722 0.24 -1.6
129,281 - Dshi_3722 0.24 -3.2
129,327 - Dshi_3722 0.27 -2.4
129,358 + Dshi_3722 0.29 -0.5
129,366 - Dshi_3722 0.29 -0.5
129,373 - Dshi_3722 0.30 +0.8
129,385 - Dshi_3722 0.30 -1.7
129,419 + Dshi_3722 0.33 +0.0
129,419 + Dshi_3722 0.33 -0.8
129,427 - Dshi_3722 0.33 -1.6
129,427 - Dshi_3722 0.33 -0.5
129,427 - Dshi_3722 0.33 +0.5
129,427 - Dshi_3722 0.33 -0.0

Or see this region's nucleotide sequence