Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3661

Experiment: m.b. A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3660 and Dshi_3661 are separated by 785 nucleotidesDshi_3661 and Dshi_3662 are separated by 12 nucleotides Dshi_3660: Dshi_3660 - hypothetical protein (RefSeq), at 61,583 to 62,512 _3660 Dshi_3661: Dshi_3661 - integrase family protein (RefSeq), at 63,298 to 64,170 _3661 Dshi_3662: Dshi_3662 - putative transposase (RefSeq), at 64,183 to 65,385 _3662 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 62.314 kb on - strand, within Dshi_3660at 62.332 kb on - strand, within Dshi_3660at 62.423 kb on - strandat 62.509 kb on - strandat 62.567 kb on - strandat 62.616 kb on + strandat 62.643 kb on + strandat 62.674 kb on - strandat 62.676 kb on - strandat 62.682 kb on - strandat 62.686 kb on - strandat 62.686 kb on - strandat 62.686 kb on - strandat 62.734 kb on - strandat 62.877 kb on + strandat 62.885 kb on - strandat 62.897 kb on - strandat 62.912 kb on + strandat 62.920 kb on - strandat 63.000 kb on + strandat 63.012 kb on + strandat 63.034 kb on + strandat 63.039 kb on + strandat 63.067 kb on - strandat 63.067 kb on - strandat 63.069 kb on + strandat 63.069 kb on + strandat 63.082 kb on - strandat 63.104 kb on + strandat 63.104 kb on + strandat 63.151 kb on + strandat 63.151 kb on + strandat 63.151 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
remove
62,314 - Dshi_3660 0.79 +0.8
62,332 - Dshi_3660 0.81 +0.7
62,423 - +1.8
62,509 - -0.6
62,567 - -0.8
62,616 + +0.9
62,643 + +0.4
62,674 - -0.6
62,676 - -0.6
62,682 - -0.2
62,686 - +1.3
62,686 - -0.4
62,686 - +0.5
62,734 - -0.3
62,877 + -1.0
62,885 - -0.0
62,897 - -0.7
62,912 + -0.2
62,920 - -0.6
63,000 + -2.1
63,012 + +0.4
63,034 + +1.0
63,039 + +0.8
63,067 - +1.1
63,067 - -0.7
63,069 + -1.8
63,069 + -0.5
63,082 - -0.7
63,104 + +0.4
63,104 + -0.7
63,151 + +0.8
63,151 + -0.1
63,151 + -0.6

Or see this region's nucleotide sequence