Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3660

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3658 and Dshi_3659 are separated by 200 nucleotidesDshi_3659 and Dshi_3660 are separated by 35 nucleotidesDshi_3660 and Dshi_3661 are separated by 785 nucleotides Dshi_3658: Dshi_3658 - hypothetical protein (RefSeq), at 60,838 to 61,044 _3658 Dshi_3659: Dshi_3659 - hypothetical protein (RefSeq), at 61,245 to 61,547 _3659 Dshi_3660: Dshi_3660 - hypothetical protein (RefSeq), at 61,583 to 62,512 _3660 Dshi_3661: Dshi_3661 - integrase family protein (RefSeq), at 63,298 to 64,170 _3661 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2 3at 60.673 kb on + strandat 60.734 kb on - strandat 60.738 kb on + strandat 60.921 kb on + strand, within Dshi_3658at 60.979 kb on + strand, within Dshi_3658at 61.006 kb on - strand, within Dshi_3658at 61.083 kb on - strandat 61.120 kb on + strandat 61.178 kb on + strandat 61.184 kb on + strandat 61.189 kb on + strandat 61.238 kb on - strandat 61.303 kb on + strand, within Dshi_3659at 61.326 kb on - strand, within Dshi_3659at 61.377 kb on + strand, within Dshi_3659at 61.385 kb on - strand, within Dshi_3659at 61.429 kb on + strand, within Dshi_3659at 61.474 kb on + strand, within Dshi_3659at 61.474 kb on + strand, within Dshi_3659at 61.475 kb on + strand, within Dshi_3659at 61.482 kb on - strand, within Dshi_3659at 61.490 kb on - strand, within Dshi_3659at 61.560 kb on + strandat 61.575 kb on - strandat 61.589 kb on - strandat 61.604 kb on - strandat 61.757 kb on + strand, within Dshi_3660at 61.862 kb on + strand, within Dshi_3660at 61.945 kb on + strand, within Dshi_3660at 61.964 kb on + strand, within Dshi_3660at 62.184 kb on - strand, within Dshi_3660at 62.184 kb on - strand, within Dshi_3660at 62.314 kb on - strand, within Dshi_3660at 62.332 kb on - strand, within Dshi_3660at 62.423 kb on - strandat 62.509 kb on - strandat 62.567 kb on - strandat 62.616 kb on + strandat 62.643 kb on + strandat 62.674 kb on - strandat 62.676 kb on - strandat 62.682 kb on - strandat 62.686 kb on - strandat 62.686 kb on - strandat 62.686 kb on - strandat 62.734 kb on - strandat 62.877 kb on + strandat 62.885 kb on - strandat 62.897 kb on - strandat 62.912 kb on + strandat 62.920 kb on - strandat 63.000 kb on + strandat 63.012 kb on + strandat 63.034 kb on + strandat 63.039 kb on + strandat 63.067 kb on - strandat 63.067 kb on - strandat 63.069 kb on + strandat 63.069 kb on + strandat 63.082 kb on - strandat 63.104 kb on + strandat 63.104 kb on + strandat 63.151 kb on + strandat 63.151 kb on + strandat 63.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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60,673 + +0.6
60,734 - +0.8
60,738 + -0.0
60,921 + Dshi_3658 0.40 +0.2
60,979 + Dshi_3658 0.68 -0.8
61,006 - Dshi_3658 0.81 -1.4
61,083 - +0.6
61,120 + -0.1
61,178 + +3.1
61,184 + -0.4
61,189 + -1.4
61,238 - +0.1
61,303 + Dshi_3659 0.19 -0.2
61,326 - Dshi_3659 0.27 +0.7
61,377 + Dshi_3659 0.44 +0.9
61,385 - Dshi_3659 0.46 +0.0
61,429 + Dshi_3659 0.61 +1.5
61,474 + Dshi_3659 0.76 -0.1
61,474 + Dshi_3659 0.76 -0.2
61,475 + Dshi_3659 0.76 -0.3
61,482 - Dshi_3659 0.78 -0.4
61,490 - Dshi_3659 0.81 +0.7
61,560 + -0.4
61,575 - -0.9
61,589 - -0.5
61,604 - +0.7
61,757 + Dshi_3660 0.19 -0.0
61,862 + Dshi_3660 0.30 -0.2
61,945 + Dshi_3660 0.39 +1.9
61,964 + Dshi_3660 0.41 -2.1
62,184 - Dshi_3660 0.65 +0.1
62,184 - Dshi_3660 0.65 -0.2
62,314 - Dshi_3660 0.79 +0.8
62,332 - Dshi_3660 0.81 +0.7
62,423 - +1.8
62,509 - -0.6
62,567 - -0.8
62,616 + +0.9
62,643 + +0.4
62,674 - -0.6
62,676 - -0.6
62,682 - -0.2
62,686 - +1.3
62,686 - -0.4
62,686 - +0.5
62,734 - -0.3
62,877 + -1.0
62,885 - -0.0
62,897 - -0.7
62,912 + -0.2
62,920 - -0.6
63,000 + -2.1
63,012 + +0.4
63,034 + +1.0
63,039 + +0.8
63,067 - +1.1
63,067 - -0.7
63,069 + -1.8
63,069 + -0.5
63,082 - -0.7
63,104 + +0.4
63,104 + -0.7
63,151 + +0.8
63,151 + -0.1
63,151 + -0.6

Or see this region's nucleotide sequence