Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3658 and Dshi_3659 are separated by 200 nucleotides Dshi_3659 and Dshi_3660 are separated by 35 nucleotides Dshi_3660 and Dshi_3661 are separated by 785 nucleotides
Dshi_3658: Dshi_3658 - hypothetical protein (RefSeq), at 60,838 to 61,044
_3658
Dshi_3659: Dshi_3659 - hypothetical protein (RefSeq), at 61,245 to 61,547
_3659
Dshi_3660: Dshi_3660 - hypothetical protein (RefSeq), at 61,583 to 62,512
_3660
Dshi_3661: Dshi_3661 - integrase family protein (RefSeq), at 63,298 to 64,170
_3661
Position (kb)
61
62
63 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 60.673 kb on + strand at 60.734 kb on - strand at 60.738 kb on + strand at 60.921 kb on + strand, within Dshi_3658 at 60.979 kb on + strand, within Dshi_3658 at 61.006 kb on - strand, within Dshi_3658 at 61.083 kb on - strand at 61.120 kb on + strand at 61.178 kb on + strand at 61.184 kb on + strand at 61.189 kb on + strand at 61.238 kb on - strand at 61.303 kb on + strand, within Dshi_3659 at 61.326 kb on - strand, within Dshi_3659 at 61.377 kb on + strand, within Dshi_3659 at 61.385 kb on - strand, within Dshi_3659 at 61.429 kb on + strand, within Dshi_3659 at 61.474 kb on + strand, within Dshi_3659 at 61.474 kb on + strand, within Dshi_3659 at 61.475 kb on + strand, within Dshi_3659 at 61.482 kb on - strand, within Dshi_3659 at 61.490 kb on - strand, within Dshi_3659 at 61.560 kb on + strand at 61.575 kb on - strand at 61.589 kb on - strand at 61.604 kb on - strand at 61.757 kb on + strand, within Dshi_3660 at 61.862 kb on + strand, within Dshi_3660 at 61.945 kb on + strand, within Dshi_3660 at 61.964 kb on + strand, within Dshi_3660 at 62.184 kb on - strand, within Dshi_3660 at 62.184 kb on - strand, within Dshi_3660 at 62.314 kb on - strand, within Dshi_3660 at 62.332 kb on - strand, within Dshi_3660 at 62.423 kb on - strand at 62.509 kb on - strand at 62.567 kb on - strand at 62.616 kb on + strand at 62.643 kb on + strand at 62.674 kb on - strand at 62.676 kb on - strand at 62.682 kb on - strand at 62.686 kb on - strand at 62.686 kb on - strand at 62.686 kb on - strand at 62.734 kb on - strand at 62.877 kb on + strand at 62.885 kb on - strand at 62.897 kb on - strand at 62.912 kb on + strand at 62.920 kb on - strand at 63.000 kb on + strand at 63.012 kb on + strand at 63.034 kb on + strand at 63.039 kb on + strand at 63.067 kb on - strand at 63.067 kb on - strand at 63.069 kb on + strand at 63.069 kb on + strand at 63.082 kb on - strand at 63.104 kb on + strand at 63.104 kb on + strand at 63.151 kb on + strand at 63.151 kb on + strand at 63.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 60,673 + +0.6 60,734 - +0.8 60,738 + -0.0 60,921 + Dshi_3658 0.40 +0.2 60,979 + Dshi_3658 0.68 -0.8 61,006 - Dshi_3658 0.81 -1.4 61,083 - +0.6 61,120 + -0.1 61,178 + +3.1 61,184 + -0.4 61,189 + -1.4 61,238 - +0.1 61,303 + Dshi_3659 0.19 -0.2 61,326 - Dshi_3659 0.27 +0.7 61,377 + Dshi_3659 0.44 +0.9 61,385 - Dshi_3659 0.46 +0.0 61,429 + Dshi_3659 0.61 +1.5 61,474 + Dshi_3659 0.76 -0.1 61,474 + Dshi_3659 0.76 -0.2 61,475 + Dshi_3659 0.76 -0.3 61,482 - Dshi_3659 0.78 -0.4 61,490 - Dshi_3659 0.81 +0.7 61,560 + -0.4 61,575 - -0.9 61,589 - -0.5 61,604 - +0.7 61,757 + Dshi_3660 0.19 -0.0 61,862 + Dshi_3660 0.30 -0.2 61,945 + Dshi_3660 0.39 +1.9 61,964 + Dshi_3660 0.41 -2.1 62,184 - Dshi_3660 0.65 +0.1 62,184 - Dshi_3660 0.65 -0.2 62,314 - Dshi_3660 0.79 +0.8 62,332 - Dshi_3660 0.81 +0.7 62,423 - +1.8 62,509 - -0.6 62,567 - -0.8 62,616 + +0.9 62,643 + +0.4 62,674 - -0.6 62,676 - -0.6 62,682 - -0.2 62,686 - +1.3 62,686 - -0.4 62,686 - +0.5 62,734 - -0.3 62,877 + -1.0 62,885 - -0.0 62,897 - -0.7 62,912 + -0.2 62,920 - -0.6 63,000 + -2.1 63,012 + +0.4 63,034 + +1.0 63,039 + +0.8 63,067 - +1.1 63,067 - -0.7 63,069 + -1.8 63,069 + -0.5 63,082 - -0.7 63,104 + +0.4 63,104 + -0.7 63,151 + +0.8 63,151 + -0.1 63,151 + -0.6
Or see this region's nucleotide sequence