Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3567
Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,753,386 | - | Dshi_3566 | 0.11 | +3.0 | |
3,753,386 | - | Dshi_3566 | 0.11 | +0.6 | |
3,753,387 | + | Dshi_3566 | 0.11 | -1.9 | |
3,753,426 | + | Dshi_3566 | 0.16 | -1.1 | |
3,753,435 | - | Dshi_3566 | 0.17 | -0.3 | |
3,753,510 | - | Dshi_3566 | 0.26 | -1.4 | |
3,753,543 | - | Dshi_3566 | 0.30 | -1.0 | |
3,753,682 | + | Dshi_3566 | 0.46 | -0.8 | |
3,753,718 | - | Dshi_3566 | 0.50 | -1.1 | |
3,753,763 | + | Dshi_3566 | 0.56 | -1.2 | |
3,753,838 | + | Dshi_3566 | 0.65 | -0.3 | |
3,753,869 | + | Dshi_3566 | 0.68 | -4.0 | |
3,753,897 | - | Dshi_3566 | 0.72 | -1.7 | |
3,753,964 | + | Dshi_3566 | 0.79 | +1.0 | |
3,753,973 | + | Dshi_3566 | 0.81 | -2.4 | |
3,753,995 | - | Dshi_3566 | 0.83 | +2.0 | |
3,753,995 | - | Dshi_3566 | 0.83 | -2.3 | |
3,754,046 | - | Dshi_3566 | 0.89 | +0.8 | |
3,754,085 | + | -2.8 | |||
3,754,088 | + | +2.4 | |||
3,754,110 | + | +0.0 | |||
3,757,199 | + | -1.7 | |||
3,757,295 | + | Dshi_3568 | 0.15 | +1.0 | |
3,757,639 | - | Dshi_3568 | 0.37 | +0.6 | |
3,757,809 | - | Dshi_3568 | 0.48 | +1.0 | |
3,757,964 | - | Dshi_3568 | 0.59 | -1.5 | |
3,758,004 | - | Dshi_3568 | 0.61 | -2.7 | |
3,758,055 | + | Dshi_3568 | 0.65 | +0.0 | |
3,758,076 | - | Dshi_3568 | 0.66 | +0.6 |
Or see this region's nucleotide sequence