Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3237 and Dshi_3238 are separated by 10 nucleotides Dshi_3238 and Dshi_3239 are separated by 41 nucleotides Dshi_3239 and Dshi_3240 are separated by 6 nucleotides
Dshi_3237: Dshi_3237 - protein of unknown function DUF897 (RefSeq), at 3,406,143 to 3,407,117
_3237
Dshi_3238: Dshi_3238 - hypothetical protein (RefSeq), at 3,407,128 to 3,407,439
_3238
Dshi_3239: Dshi_3239 - hypothetical protein (RefSeq), at 3,407,481 to 3,407,954
_3239
Dshi_3240: Dshi_3240 - aspartate-semialdehyde dehydrogenase (RefSeq), at 3,407,961 to 3,408,983
_3240
Position (kb)
3407
3408 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3406.141 kb on - strand at 3406.148 kb on - strand at 3406.198 kb on + strand at 3406.239 kb on - strand at 3406.255 kb on - strand, within Dshi_3237 at 3406.379 kb on - strand, within Dshi_3237 at 3406.399 kb on + strand, within Dshi_3237 at 3406.528 kb on + strand, within Dshi_3237 at 3406.600 kb on - strand, within Dshi_3237 at 3406.682 kb on + strand, within Dshi_3237 at 3406.840 kb on - strand, within Dshi_3237 at 3406.906 kb on + strand, within Dshi_3237 at 3407.207 kb on + strand, within Dshi_3238 at 3407.271 kb on - strand, within Dshi_3238 at 3407.315 kb on - strand, within Dshi_3238 at 3407.665 kb on - strand, within Dshi_3239 at 3407.775 kb on + strand, within Dshi_3239 at 3407.778 kb on - strand, within Dshi_3239 at 3407.844 kb on - strand, within Dshi_3239 at 3407.924 kb on + strand at 3407.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 3,406,141 - -1.2 3,406,148 - +2.0 3,406,198 + -0.7 3,406,239 - +1.4 3,406,255 - Dshi_3237 0.11 -0.5 3,406,379 - Dshi_3237 0.24 +0.9 3,406,399 + Dshi_3237 0.26 -0.9 3,406,528 + Dshi_3237 0.39 -0.3 3,406,600 - Dshi_3237 0.47 +0.6 3,406,682 + Dshi_3237 0.55 -0.3 3,406,840 - Dshi_3237 0.71 -0.3 3,406,906 + Dshi_3237 0.78 +1.4 3,407,207 + Dshi_3238 0.25 -0.3 3,407,271 - Dshi_3238 0.46 -1.2 3,407,315 - Dshi_3238 0.60 -1.9 3,407,665 - Dshi_3239 0.39 +0.4 3,407,775 + Dshi_3239 0.62 +0.4 3,407,778 - Dshi_3239 0.63 -0.0 3,407,844 - Dshi_3239 0.77 +1.4 3,407,924 + -0.3 3,407,932 - -0.4
Or see this region's nucleotide sequence