Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3146 and Dshi_3147 are separated by 34 nucleotides Dshi_3147 and Dshi_3148 are separated by 2 nucleotides Dshi_3148 and Dshi_3149 overlap by 4 nucleotides
Dshi_3146: Dshi_3146 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit (RefSeq), at 3,312,960 to 3,313,922
_3146
Dshi_3147: Dshi_3147 - protein of unknown function DUF306 Meta and HslJ (RefSeq), at 3,313,957 to 3,314,697
_3147
Dshi_3148: Dshi_3148 - hypothetical protein (RefSeq), at 3,314,700 to 3,315,176
_3148
Dshi_3149: Dshi_3149 - peptidase M15D vanX D-ala-D-ala dipeptidase (RefSeq), at 3,315,173 to 3,315,985
_3149
Position (kb)
3313
3314
3315 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3314.091 kb on + strand, within Dshi_3147 at 3314.091 kb on - strand, within Dshi_3147 at 3314.228 kb on + strand, within Dshi_3147 at 3314.250 kb on + strand, within Dshi_3147 at 3314.341 kb on - strand, within Dshi_3147 at 3314.418 kb on - strand, within Dshi_3147 at 3314.982 kb on + strand, within Dshi_3148 at 3315.075 kb on - strand, within Dshi_3148 at 3315.081 kb on + strand, within Dshi_3148 at 3315.186 kb on + strand at 3315.191 kb on + strand at 3315.227 kb on + strand at 3315.294 kb on + strand, within Dshi_3149 at 3315.375 kb on + strand, within Dshi_3149 at 3315.385 kb on + strand, within Dshi_3149 at 3315.424 kb on - strand, within Dshi_3149 at 3315.487 kb on - strand, within Dshi_3149 at 3315.687 kb on + strand, within Dshi_3149
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 3,314,091 + Dshi_3147 0.18 -1.9 3,314,091 - Dshi_3147 0.18 -0.9 3,314,228 + Dshi_3147 0.37 -1.4 3,314,250 + Dshi_3147 0.40 -1.3 3,314,341 - Dshi_3147 0.52 -0.9 3,314,418 - Dshi_3147 0.62 +3.3 3,314,982 + Dshi_3148 0.59 +0.5 3,315,075 - Dshi_3148 0.79 -0.5 3,315,081 + Dshi_3148 0.80 -0.0 3,315,186 + +0.9 3,315,191 + -0.6 3,315,227 + -0.2 3,315,294 + Dshi_3149 0.15 +0.9 3,315,375 + Dshi_3149 0.25 +0.9 3,315,385 + Dshi_3149 0.26 +1.2 3,315,424 - Dshi_3149 0.31 -3.0 3,315,487 - Dshi_3149 0.39 -0.5 3,315,687 + Dshi_3149 0.63 +0.6
Or see this region's nucleotide sequence