Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3082 and Dshi_3083 are separated by 119 nucleotides Dshi_3083 and Dshi_3084 are separated by 57 nucleotides Dshi_3084 and Dshi_3085 are separated by 125 nucleotides
Dshi_3082: Dshi_3082 - hypothetical protein (RefSeq), at 3,252,382 to 3,253,191
_3082
Dshi_3083: Dshi_3083 - protein of unknown function DUF179 (RefSeq), at 3,253,311 to 3,253,889
_3083
Dshi_3084: Dshi_3084 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 3,253,947 to 3,254,924
_3084
Dshi_3085: Dshi_3085 - acyl-CoA dehydrogenase domain protein (RefSeq), at 3,255,050 to 3,256,765
_3085
Position (kb)
3253
3254
3255 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3253.147 kb on - strand at 3253.181 kb on - strand at 3253.207 kb on + strand at 3253.238 kb on + strand at 3253.283 kb on + strand at 3253.311 kb on + strand at 3253.315 kb on - strand at 3253.334 kb on - strand at 3253.367 kb on - strand at 3253.386 kb on + strand, within Dshi_3083 at 3253.417 kb on + strand, within Dshi_3083 at 3253.561 kb on - strand, within Dshi_3083 at 3253.571 kb on - strand, within Dshi_3083 at 3253.709 kb on + strand, within Dshi_3083 at 3253.790 kb on + strand, within Dshi_3083 at 3255.063 kb on - strand at 3255.330 kb on - strand, within Dshi_3085 at 3255.366 kb on - strand, within Dshi_3085 at 3255.413 kb on - strand, within Dshi_3085 at 3255.427 kb on + strand, within Dshi_3085 at 3255.458 kb on - strand, within Dshi_3085 at 3255.886 kb on + strand, within Dshi_3085 at 3255.899 kb on + strand, within Dshi_3085
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 3,253,147 - +0.5 3,253,181 - -0.5 3,253,207 + +1.2 3,253,238 + +0.5 3,253,283 + -0.9 3,253,311 + +0.5 3,253,315 - -0.0 3,253,334 - -1.7 3,253,367 - -0.7 3,253,386 + Dshi_3083 0.13 -1.9 3,253,417 + Dshi_3083 0.18 -0.1 3,253,561 - Dshi_3083 0.43 -0.9 3,253,571 - Dshi_3083 0.45 -1.1 3,253,709 + Dshi_3083 0.69 -1.0 3,253,790 + Dshi_3083 0.83 +0.5 3,255,063 - -1.5 3,255,330 - Dshi_3085 0.16 +2.1 3,255,366 - Dshi_3085 0.18 -2.3 3,255,413 - Dshi_3085 0.21 +1.5 3,255,427 + Dshi_3085 0.22 +0.1 3,255,458 - Dshi_3085 0.24 +0.5 3,255,886 + Dshi_3085 0.49 -0.9 3,255,899 + Dshi_3085 0.49 -0.4
Or see this region's nucleotide sequence