Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3059

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3058 and Dshi_3059 are separated by 3 nucleotidesDshi_3059 and Dshi_3060 are separated by 78 nucleotidesDshi_3060 and Dshi_3061 are separated by 151 nucleotidesDshi_3061 and Dshi_3062 overlap by 4 nucleotides Dshi_3058: Dshi_3058 - hypothetical protein (RefSeq), at 3,225,943 to 3,228,627 _3058 Dshi_3059: Dshi_3059 - diaminopimelate decarboxylase (RefSeq), at 3,228,631 to 3,229,926 _3059 Dshi_3060: Dshi_3060 - hypothetical protein (RefSeq), at 3,230,005 to 3,230,340 _3060 Dshi_3061: Dshi_3061 - hypothetical protein (RefSeq), at 3,230,492 to 3,230,662 _3061 Dshi_3062: Dshi_3062 - argininosuccinate lyase (RefSeq), at 3,230,659 to 3,232,050 _3062 Position (kb) 3228 3229 3230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3227.685 kb on - strand, within Dshi_3058at 3227.768 kb on - strand, within Dshi_3058at 3227.943 kb on - strand, within Dshi_3058at 3228.014 kb on - strand, within Dshi_3058at 3228.128 kb on - strand, within Dshi_3058at 3228.138 kb on - strand, within Dshi_3058at 3228.219 kb on - strand, within Dshi_3058at 3228.293 kb on - strand, within Dshi_3058at 3228.312 kb on - strand, within Dshi_3058at 3228.362 kb on - strandat 3228.557 kb on - strandat 3228.574 kb on + strandat 3228.611 kb on + strandat 3228.629 kb on + strandat 3228.629 kb on + strandat 3228.654 kb on + strandat 3230.181 kb on + strand, within Dshi_3060at 3230.316 kb on + strandat 3230.324 kb on - strandat 3230.478 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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3,227,685 - Dshi_3058 0.65 -3.3
3,227,768 - Dshi_3058 0.68 +1.4
3,227,943 - Dshi_3058 0.74 +1.5
3,228,014 - Dshi_3058 0.77 +0.3
3,228,128 - Dshi_3058 0.81 -2.0
3,228,138 - Dshi_3058 0.82 +0.5
3,228,219 - Dshi_3058 0.85 -1.5
3,228,293 - Dshi_3058 0.88 -0.5
3,228,312 - Dshi_3058 0.88 -1.7
3,228,362 - -1.2
3,228,557 - -1.8
3,228,574 + +0.5
3,228,611 + -0.5
3,228,629 + +0.5
3,228,629 + -1.7
3,228,654 + +2.1
3,230,181 + Dshi_3060 0.52 +1.1
3,230,316 + +0.1
3,230,324 - +2.1
3,230,478 + -0.5

Or see this region's nucleotide sequence