Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2914
Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,072,035 | + | Dshi_2913 | 0.12 | -1.7 | |
3,072,149 | - | Dshi_2913 | 0.23 | +2.8 | |
3,072,426 | - | Dshi_2913 | 0.52 | -0.9 | |
3,072,429 | - | Dshi_2913 | 0.52 | -0.3 | |
3,072,568 | - | Dshi_2913 | 0.67 | -0.3 | |
3,072,616 | - | Dshi_2913 | 0.72 | -1.5 | |
3,072,634 | - | Dshi_2913 | 0.74 | -0.5 | |
3,072,858 | + | +2.8 | |||
3,072,964 | + | +0.5 | |||
3,073,091 | + | Dshi_2914 | 0.19 | -0.8 | |
3,073,143 | - | Dshi_2914 | 0.26 | -2.3 | |
3,073,150 | + | Dshi_2914 | 0.27 | -0.5 | |
3,073,158 | - | Dshi_2914 | 0.28 | +1.5 | |
3,073,269 | + | +2.5 | |||
3,073,516 | + | Dshi_2914 | 0.75 | -0.5 | |
3,073,562 | + | Dshi_2914 | 0.81 | -0.9 | |
3,073,623 | - | Dshi_2914 | 0.89 | -0.7 | |
3,073,781 | + | -2.1 | |||
3,073,802 | - | -1.1 | |||
3,073,802 | - | +3.1 | |||
3,073,843 | - | Dshi_2915 | 0.13 | -4.3 | |
3,073,893 | - | Dshi_2915 | 0.24 | -0.1 | |
3,074,023 | + | Dshi_2915 | 0.53 | +0.2 | |
3,074,055 | + | Dshi_2915 | 0.60 | +0.5 | |
3,074,086 | + | Dshi_2915 | 0.67 | -0.9 | |
3,074,248 | + | -0.6 | |||
3,074,415 | - | Dshi_2916 | 0.22 | +0.7 | |
3,074,465 | - | Dshi_2916 | 0.28 | -0.5 | |
3,074,473 | + | Dshi_2916 | 0.29 | -1.5 | |
3,074,605 | - | Dshi_2916 | 0.44 | -2.7 | |
3,074,645 | + | Dshi_2916 | 0.49 | +1.5 |
Or see this region's nucleotide sequence