Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2791 and Dshi_2792 are separated by 35 nucleotides Dshi_2792 and Dshi_2793 overlap by 4 nucleotides Dshi_2793 and Dshi_2794 are separated by 22 nucleotides
Dshi_2791: Dshi_2791 - hypothetical protein (RefSeq), at 2,950,066 to 2,950,944
_2791
Dshi_2792: Dshi_2792 - toxic anion resistance family protein (RefSeq), at 2,950,980 to 2,952,173
_2792
Dshi_2793: Dshi_2793 - lipoprotein, putative (RefSeq), at 2,952,170 to 2,953,117
_2793
Dshi_2794: Dshi_2794 - hypothetical protein (RefSeq), at 2,953,140 to 2,954,270
_2794
Position (kb)
2950
2951
2952
2953 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2950.004 kb on - strand at 2950.012 kb on - strand at 2950.028 kb on + strand at 2950.116 kb on + strand at 2950.124 kb on - strand at 2950.151 kb on + strand at 2950.198 kb on + strand, within Dshi_2791 at 2950.247 kb on - strand, within Dshi_2791 at 2950.322 kb on - strand, within Dshi_2791 at 2950.377 kb on + strand, within Dshi_2791 at 2950.385 kb on + strand, within Dshi_2791 at 2950.393 kb on - strand, within Dshi_2791 at 2950.517 kb on + strand, within Dshi_2791 at 2950.527 kb on + strand, within Dshi_2791 at 2950.536 kb on - strand, within Dshi_2791 at 2950.563 kb on + strand, within Dshi_2791 at 2950.620 kb on + strand, within Dshi_2791 at 2950.641 kb on + strand, within Dshi_2791 at 2950.674 kb on + strand, within Dshi_2791 at 2950.812 kb on - strand, within Dshi_2791 at 2950.945 kb on + strand at 2951.003 kb on + strand at 2951.191 kb on - strand, within Dshi_2792 at 2951.247 kb on + strand, within Dshi_2792 at 2951.390 kb on + strand, within Dshi_2792 at 2951.390 kb on + strand, within Dshi_2792 at 2951.447 kb on + strand, within Dshi_2792 at 2951.565 kb on - strand, within Dshi_2792 at 2951.587 kb on - strand, within Dshi_2792 at 2951.608 kb on + strand, within Dshi_2792 at 2951.623 kb on + strand, within Dshi_2792 at 2951.696 kb on + strand, within Dshi_2792 at 2951.778 kb on + strand, within Dshi_2792 at 2951.780 kb on + strand, within Dshi_2792 at 2951.788 kb on - strand, within Dshi_2792 at 2951.794 kb on - strand, within Dshi_2792 at 2951.813 kb on + strand, within Dshi_2792 at 2951.847 kb on + strand, within Dshi_2792 at 2952.009 kb on + strand, within Dshi_2792 at 2952.127 kb on - strand at 2952.147 kb on + strand at 2952.470 kb on - strand, within Dshi_2793 at 2952.470 kb on - strand, within Dshi_2793 at 2952.581 kb on + strand, within Dshi_2793 at 2952.581 kb on + strand, within Dshi_2793 at 2952.581 kb on + strand, within Dshi_2793 at 2952.589 kb on - strand, within Dshi_2793 at 2952.589 kb on - strand, within Dshi_2793 at 2952.667 kb on + strand, within Dshi_2793 at 2952.817 kb on - strand, within Dshi_2793 at 2952.833 kb on + strand, within Dshi_2793 at 2952.918 kb on + strand, within Dshi_2793 at 2952.947 kb on - strand, within Dshi_2793 at 2952.960 kb on - strand, within Dshi_2793 at 2953.089 kb on + strand at 2953.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 2,950,004 - -1.1 2,950,012 - -2.1 2,950,028 + +0.5 2,950,116 + +0.5 2,950,124 - -0.7 2,950,151 + +0.5 2,950,198 + Dshi_2791 0.15 -0.2 2,950,247 - Dshi_2791 0.21 -0.9 2,950,322 - Dshi_2791 0.29 -0.9 2,950,377 + Dshi_2791 0.35 +1.5 2,950,385 + Dshi_2791 0.36 -0.5 2,950,393 - Dshi_2791 0.37 -1.1 2,950,517 + Dshi_2791 0.51 -0.9 2,950,527 + Dshi_2791 0.52 -0.5 2,950,536 - Dshi_2791 0.53 -0.4 2,950,563 + Dshi_2791 0.57 +0.5 2,950,620 + Dshi_2791 0.63 -1.1 2,950,641 + Dshi_2791 0.65 -0.2 2,950,674 + Dshi_2791 0.69 +0.8 2,950,812 - Dshi_2791 0.85 -1.3 2,950,945 + -0.2 2,951,003 + -1.6 2,951,191 - Dshi_2792 0.18 -1.8 2,951,247 + Dshi_2792 0.22 -1.1 2,951,390 + Dshi_2792 0.34 +2.1 2,951,390 + Dshi_2792 0.34 -0.2 2,951,447 + Dshi_2792 0.39 -0.7 2,951,565 - Dshi_2792 0.49 -0.5 2,951,587 - Dshi_2792 0.51 -1.1 2,951,608 + Dshi_2792 0.53 -0.7 2,951,623 + Dshi_2792 0.54 -1.1 2,951,696 + Dshi_2792 0.60 -1.5 2,951,778 + Dshi_2792 0.67 -3.2 2,951,780 + Dshi_2792 0.67 -0.5 2,951,788 - Dshi_2792 0.68 -0.5 2,951,794 - Dshi_2792 0.68 -1.3 2,951,813 + Dshi_2792 0.70 -1.7 2,951,847 + Dshi_2792 0.73 -2.5 2,952,009 + Dshi_2792 0.86 +2.5 2,952,127 - -0.9 2,952,147 + +2.5 2,952,470 - Dshi_2793 0.32 +0.5 2,952,470 - Dshi_2793 0.32 +1.8 2,952,581 + Dshi_2793 0.43 -1.0 2,952,581 + Dshi_2793 0.43 -1.2 2,952,581 + Dshi_2793 0.43 +2.5 2,952,589 - Dshi_2793 0.44 -2.8 2,952,589 - Dshi_2793 0.44 -1.1 2,952,667 + Dshi_2793 0.52 -0.5 2,952,817 - Dshi_2793 0.68 -4.1 2,952,833 + Dshi_2793 0.70 -0.6 2,952,918 + Dshi_2793 0.79 -0.5 2,952,947 - Dshi_2793 0.82 +0.5 2,952,960 - Dshi_2793 0.83 -0.5 2,953,089 + -1.7 2,953,121 - -1.5
Or see this region's nucleotide sequence