Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2651

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2650 and Dshi_2651 overlap by 4 nucleotidesDshi_2651 and Dshi_2652 are separated by 499 nucleotides Dshi_2650: Dshi_2650 - protein of unknown function DUF185 (RefSeq), at 2,805,488 to 2,806,579 _2650 Dshi_2651: Dshi_2651 - protein of unknown function DUF152 (RefSeq), at 2,806,576 to 2,807,334 _2651 Dshi_2652: Dshi_2652 - hypothetical protein (RefSeq), at 2,807,834 to 2,808,538 _2652 Position (kb) 2806 2807 2808Strain fitness (log2 ratio) -3 -2 -1 0 1at 2806.698 kb on + strand, within Dshi_2651at 2806.706 kb on - strand, within Dshi_2651at 2806.822 kb on - strand, within Dshi_2651at 2806.826 kb on + strand, within Dshi_2651at 2806.834 kb on - strand, within Dshi_2651at 2807.143 kb on + strand, within Dshi_2651at 2807.185 kb on - strand, within Dshi_2651at 2807.211 kb on + strand, within Dshi_2651at 2807.289 kb on - strandat 2807.527 kb on + strandat 2807.590 kb on - strandat 2807.667 kb on + strandat 2807.704 kb on + strandat 2807.826 kb on - strandat 2807.830 kb on + strandat 2807.847 kb on + strandat 2807.848 kb on - strandat 2807.901 kb on + strandat 2807.931 kb on + strand, within Dshi_2652at 2807.931 kb on + strand, within Dshi_2652at 2808.156 kb on + strand, within Dshi_2652at 2808.199 kb on - strand, within Dshi_2652at 2808.321 kb on - strand, within Dshi_2652

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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2,806,698 + Dshi_2651 0.16 +0.2
2,806,706 - Dshi_2651 0.17 -1.0
2,806,822 - Dshi_2651 0.32 +0.2
2,806,826 + Dshi_2651 0.33 -1.8
2,806,834 - Dshi_2651 0.34 -2.6
2,807,143 + Dshi_2651 0.75 -2.4
2,807,185 - Dshi_2651 0.80 +1.2
2,807,211 + Dshi_2651 0.84 -0.4
2,807,289 - +0.2
2,807,527 + -3.1
2,807,590 - -1.0
2,807,667 + -2.1
2,807,704 + -0.6
2,807,826 - +0.2
2,807,830 + -0.8
2,807,847 + +0.8
2,807,848 - -1.8
2,807,901 + +0.6
2,807,931 + Dshi_2652 0.14 +0.2
2,807,931 + Dshi_2652 0.14 -1.6
2,808,156 + Dshi_2652 0.46 -1.0
2,808,199 - Dshi_2652 0.52 -0.5
2,808,321 - Dshi_2652 0.69 -1.1

Or see this region's nucleotide sequence