Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2633 and Dshi_2634 are separated by 99 nucleotides Dshi_2634 and Dshi_2635 are separated by 27 nucleotides Dshi_2635 and Dshi_2636 are separated by 42 nucleotides
Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data) , at 2,788,656 to 2,790,428
_2633
Dshi_2634: Dshi_2634 - hypothetical protein (RefSeq), at 2,790,528 to 2,790,977
_2634
Dshi_2635: Dshi_2635 - pentapeptide repeat protein (RefSeq), at 2,791,005 to 2,791,742
_2635
Dshi_2636: Dshi_2636 - bacteriochlorophyll 4-vinyl reductase (RefSeq), at 2,791,785 to 2,792,408
_2636
Position (kb)
2790
2791 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2790.507 kb on - strand at 2790.527 kb on - strand at 2790.528 kb on - strand at 2790.528 kb on - strand at 2790.782 kb on + strand, within Dshi_2634 at 2790.782 kb on + strand, within Dshi_2634 at 2790.790 kb on - strand, within Dshi_2634 at 2790.790 kb on - strand, within Dshi_2634 at 2790.796 kb on + strand, within Dshi_2634 at 2790.821 kb on + strand, within Dshi_2634 at 2790.834 kb on - strand, within Dshi_2634 at 2790.987 kb on - strand at 2791.002 kb on + strand at 2791.035 kb on - strand at 2791.055 kb on - strand at 2791.129 kb on - strand, within Dshi_2635 at 2791.256 kb on + strand, within Dshi_2635 at 2791.296 kb on + strand, within Dshi_2635 at 2791.296 kb on + strand, within Dshi_2635 at 2791.296 kb on + strand, within Dshi_2635 at 2791.311 kb on - strand, within Dshi_2635 at 2791.311 kb on - strand, within Dshi_2635 at 2791.362 kb on - strand, within Dshi_2635 at 2791.449 kb on - strand, within Dshi_2635 at 2791.476 kb on + strand, within Dshi_2635 at 2791.486 kb on + strand, within Dshi_2635 at 2791.529 kb on - strand, within Dshi_2635 at 2791.591 kb on + strand, within Dshi_2635 at 2791.596 kb on + strand, within Dshi_2635 at 2791.596 kb on + strand, within Dshi_2635 at 2791.599 kb on - strand, within Dshi_2635 at 2791.604 kb on - strand, within Dshi_2635 at 2791.614 kb on - strand, within Dshi_2635 at 2791.614 kb on - strand, within Dshi_2635 at 2791.694 kb on - strand at 2791.931 kb on - strand, within Dshi_2636
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 2,790,507 - -0.4 2,790,527 - +0.2 2,790,528 - +0.1 2,790,528 - +0.2 2,790,782 + Dshi_2634 0.56 -2.1 2,790,782 + Dshi_2634 0.56 -0.2 2,790,790 - Dshi_2634 0.58 -0.9 2,790,790 - Dshi_2634 0.58 +2.2 2,790,796 + Dshi_2634 0.60 -0.5 2,790,821 + Dshi_2634 0.65 -0.6 2,790,834 - Dshi_2634 0.68 +0.2 2,790,987 - -3.9 2,791,002 + -1.8 2,791,035 - -2.4 2,791,055 - -1.7 2,791,129 - Dshi_2635 0.17 -0.3 2,791,256 + Dshi_2635 0.34 +0.2 2,791,296 + Dshi_2635 0.39 -1.1 2,791,296 + Dshi_2635 0.39 -3.0 2,791,296 + Dshi_2635 0.39 -1.4 2,791,311 - Dshi_2635 0.41 +1.2 2,791,311 - Dshi_2635 0.41 -0.9 2,791,362 - Dshi_2635 0.48 +2.5 2,791,449 - Dshi_2635 0.60 -1.4 2,791,476 + Dshi_2635 0.64 +1.2 2,791,486 + Dshi_2635 0.65 +1.2 2,791,529 - Dshi_2635 0.71 -0.2 2,791,591 + Dshi_2635 0.79 +1.2 2,791,596 + Dshi_2635 0.80 +0.2 2,791,596 + Dshi_2635 0.80 -1.8 2,791,599 - Dshi_2635 0.80 -3.0 2,791,604 - Dshi_2635 0.81 -0.6 2,791,614 - Dshi_2635 0.83 -2.5 2,791,614 - Dshi_2635 0.83 -3.0 2,791,694 - +0.2 2,791,931 - Dshi_2636 0.23 -2.6
Or see this region's nucleotide sequence