Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2634

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2633 and Dshi_2634 are separated by 99 nucleotidesDshi_2634 and Dshi_2635 are separated by 27 nucleotidesDshi_2635 and Dshi_2636 are separated by 42 nucleotides Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,788,656 to 2,790,428 _2633 Dshi_2634: Dshi_2634 - hypothetical protein (RefSeq), at 2,790,528 to 2,790,977 _2634 Dshi_2635: Dshi_2635 - pentapeptide repeat protein (RefSeq), at 2,791,005 to 2,791,742 _2635 Dshi_2636: Dshi_2636 - bacteriochlorophyll 4-vinyl reductase (RefSeq), at 2,791,785 to 2,792,408 _2636 Position (kb) 2790 2791Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2790.507 kb on - strandat 2790.527 kb on - strandat 2790.528 kb on - strandat 2790.528 kb on - strandat 2790.782 kb on + strand, within Dshi_2634at 2790.782 kb on + strand, within Dshi_2634at 2790.790 kb on - strand, within Dshi_2634at 2790.790 kb on - strand, within Dshi_2634at 2790.796 kb on + strand, within Dshi_2634at 2790.821 kb on + strand, within Dshi_2634at 2790.834 kb on - strand, within Dshi_2634at 2790.987 kb on - strandat 2791.002 kb on + strandat 2791.035 kb on - strandat 2791.055 kb on - strandat 2791.129 kb on - strand, within Dshi_2635at 2791.256 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.311 kb on - strand, within Dshi_2635at 2791.311 kb on - strand, within Dshi_2635at 2791.362 kb on - strand, within Dshi_2635at 2791.449 kb on - strand, within Dshi_2635at 2791.476 kb on + strand, within Dshi_2635at 2791.486 kb on + strand, within Dshi_2635at 2791.529 kb on - strand, within Dshi_2635at 2791.591 kb on + strand, within Dshi_2635at 2791.596 kb on + strand, within Dshi_2635at 2791.596 kb on + strand, within Dshi_2635at 2791.599 kb on - strand, within Dshi_2635at 2791.604 kb on - strand, within Dshi_2635at 2791.614 kb on - strand, within Dshi_2635at 2791.614 kb on - strand, within Dshi_2635at 2791.694 kb on - strandat 2791.931 kb on - strand, within Dshi_2636

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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2,790,507 - -0.4
2,790,527 - +0.2
2,790,528 - +0.1
2,790,528 - +0.2
2,790,782 + Dshi_2634 0.56 -2.1
2,790,782 + Dshi_2634 0.56 -0.2
2,790,790 - Dshi_2634 0.58 -0.9
2,790,790 - Dshi_2634 0.58 +2.2
2,790,796 + Dshi_2634 0.60 -0.5
2,790,821 + Dshi_2634 0.65 -0.6
2,790,834 - Dshi_2634 0.68 +0.2
2,790,987 - -3.9
2,791,002 + -1.8
2,791,035 - -2.4
2,791,055 - -1.7
2,791,129 - Dshi_2635 0.17 -0.3
2,791,256 + Dshi_2635 0.34 +0.2
2,791,296 + Dshi_2635 0.39 -1.1
2,791,296 + Dshi_2635 0.39 -3.0
2,791,296 + Dshi_2635 0.39 -1.4
2,791,311 - Dshi_2635 0.41 +1.2
2,791,311 - Dshi_2635 0.41 -0.9
2,791,362 - Dshi_2635 0.48 +2.5
2,791,449 - Dshi_2635 0.60 -1.4
2,791,476 + Dshi_2635 0.64 +1.2
2,791,486 + Dshi_2635 0.65 +1.2
2,791,529 - Dshi_2635 0.71 -0.2
2,791,591 + Dshi_2635 0.79 +1.2
2,791,596 + Dshi_2635 0.80 +0.2
2,791,596 + Dshi_2635 0.80 -1.8
2,791,599 - Dshi_2635 0.80 -3.0
2,791,604 - Dshi_2635 0.81 -0.6
2,791,614 - Dshi_2635 0.83 -2.5
2,791,614 - Dshi_2635 0.83 -3.0
2,791,694 - +0.2
2,791,931 - Dshi_2636 0.23 -2.6

Or see this region's nucleotide sequence