Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2400

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2398 and Dshi_2399 are separated by 10 nucleotidesDshi_2399 and Dshi_2400 are separated by 90 nucleotidesDshi_2400 and Dshi_2401 are separated by 175 nucleotides Dshi_2398: Dshi_2398 - dihydropteroate synthase (RefSeq), at 2,532,406 to 2,533,419 _2398 Dshi_2399: Dshi_2399 - dihydroneopterin aldolase (RefSeq), at 2,533,430 to 2,534,281 _2399 Dshi_2400: Dshi_2400 - cell wall hydrolase SleB (RefSeq), at 2,534,372 to 2,535,064 _2400 Dshi_2401: Dshi_2401 - PEP-utilizing protein (RefSeq), at 2,535,240 to 2,537,828 _2401 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -3 -2 -1 0 1at 2534.402 kb on - strandat 2534.642 kb on - strand, within Dshi_2400at 2534.787 kb on - strand, within Dshi_2400at 2534.856 kb on - strand, within Dshi_2400at 2534.894 kb on - strand, within Dshi_2400at 2534.919 kb on + strand, within Dshi_2400at 2534.946 kb on - strand, within Dshi_2400at 2534.946 kb on - strand, within Dshi_2400at 2535.082 kb on - strandat 2535.471 kb on - strandat 2535.669 kb on + strand, within Dshi_2401at 2535.769 kb on + strand, within Dshi_2401at 2535.838 kb on + strand, within Dshi_2401at 2535.918 kb on - strand, within Dshi_2401at 2535.974 kb on + strand, within Dshi_2401

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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2,534,402 - -3.2
2,534,642 - Dshi_2400 0.39 -2.2
2,534,787 - Dshi_2400 0.60 -3.2
2,534,856 - Dshi_2400 0.70 -1.7
2,534,894 - Dshi_2400 0.75 +0.4
2,534,919 + Dshi_2400 0.79 -0.2
2,534,946 - Dshi_2400 0.83 -1.3
2,534,946 - Dshi_2400 0.83 -1.6
2,535,082 - +0.4
2,535,471 - -3.7
2,535,669 + Dshi_2401 0.17 -1.4
2,535,769 + Dshi_2401 0.20 -2.0
2,535,838 + Dshi_2401 0.23 +1.0
2,535,918 - Dshi_2401 0.26 -1.2
2,535,974 + Dshi_2401 0.28 -0.0

Or see this region's nucleotide sequence