Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2332 and Dshi_2333 are separated by 97 nucleotides Dshi_2333 and Dshi_2334 are separated by 116 nucleotides Dshi_2334 and Dshi_2335 are separated by 227 nucleotides Dshi_2335 and Dshi_2336 are separated by 77 nucleotides Dshi_2336 and Dshi_2337 are separated by 39 nucleotides
Dshi_2332: Dshi_2332 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 2,461,615 to 2,462,868
_2332
Dshi_2333: Dshi_2333 - protein of unknown function DUF1321 (RefSeq), at 2,462,966 to 2,463,493
_2333
Dshi_2334: Dshi_2334 - fumarate hydratase, class II (RefSeq), at 2,463,610 to 2,465,007
_2334
Dshi_2335: Dshi_2335 - arylsulfate sulfotransferase-like protein (RefSeq), at 2,465,235 to 2,465,534
_2335
Dshi_2336: Dshi_2336 - hypothetical protein (RefSeq), at 2,465,612 to 2,465,803
_2336
Dshi_2337: Dshi_2337 - cytochrome P450 (RefSeq), at 2,465,843 to 2,467,219
_2337
Position (kb)
2463
2464
2465
2466 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2462.611 kb on + strand, within Dshi_2332 at 2462.618 kb on + strand, within Dshi_2332 at 2462.753 kb on + strand at 2462.767 kb on - strand at 2462.769 kb on + strand at 2462.773 kb on - strand at 2462.777 kb on - strand at 2462.858 kb on - strand at 2462.862 kb on + strand at 2462.862 kb on + strand at 2462.870 kb on - strand at 2462.924 kb on + strand at 2463.019 kb on + strand, within Dshi_2333 at 2463.019 kb on + strand, within Dshi_2333 at 2463.019 kb on + strand, within Dshi_2333 at 2463.027 kb on - strand, within Dshi_2333 at 2463.027 kb on - strand, within Dshi_2333 at 2463.029 kb on + strand, within Dshi_2333 at 2463.076 kb on - strand, within Dshi_2333 at 2463.087 kb on + strand, within Dshi_2333 at 2463.190 kb on - strand, within Dshi_2333 at 2463.298 kb on - strand, within Dshi_2333 at 2463.337 kb on + strand, within Dshi_2333 at 2463.360 kb on + strand, within Dshi_2333 at 2463.414 kb on + strand, within Dshi_2333 at 2463.455 kb on - strand at 2463.473 kb on + strand at 2463.554 kb on + strand at 2463.554 kb on + strand at 2463.567 kb on - strand at 2463.567 kb on - strand at 2465.027 kb on + strand at 2465.344 kb on + strand, within Dshi_2335 at 2465.398 kb on - strand, within Dshi_2335 at 2465.549 kb on - strand at 2465.568 kb on - strand at 2465.741 kb on + strand, within Dshi_2336 at 2465.749 kb on - strand, within Dshi_2336 at 2465.798 kb on - strand at 2465.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 2,462,611 + Dshi_2332 0.79 -1.2 2,462,618 + Dshi_2332 0.80 +0.7 2,462,753 + -0.1 2,462,767 - -2.4 2,462,769 + -1.0 2,462,773 - +0.1 2,462,777 - -0.2 2,462,858 - -0.5 2,462,862 + -0.6 2,462,862 + -0.9 2,462,870 - -0.7 2,462,924 + -0.2 2,463,019 + Dshi_2333 0.10 +0.7 2,463,019 + Dshi_2333 0.10 -0.6 2,463,019 + Dshi_2333 0.10 -0.7 2,463,027 - Dshi_2333 0.12 -1.2 2,463,027 - Dshi_2333 0.12 -1.1 2,463,029 + Dshi_2333 0.12 -0.4 2,463,076 - Dshi_2333 0.21 -1.7 2,463,087 + Dshi_2333 0.23 +0.8 2,463,190 - Dshi_2333 0.42 +2.4 2,463,298 - Dshi_2333 0.63 +0.8 2,463,337 + Dshi_2333 0.70 -2.3 2,463,360 + Dshi_2333 0.75 -1.0 2,463,414 + Dshi_2333 0.85 +2.4 2,463,455 - -1.9 2,463,473 + -0.6 2,463,554 + +1.1 2,463,554 + +0.2 2,463,567 - -1.9 2,463,567 - -1.7 2,465,027 + +0.3 2,465,344 + Dshi_2335 0.36 -1.0 2,465,398 - Dshi_2335 0.54 -1.9 2,465,549 - -0.7 2,465,568 - -0.6 2,465,741 + Dshi_2336 0.67 +0.7 2,465,749 - Dshi_2336 0.71 +0.7 2,465,798 - -1.3 2,465,875 + +2.3
Or see this region's nucleotide sequence