Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2331

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2329 and Dshi_2330 are separated by 80 nucleotidesDshi_2330 and Dshi_2331 are separated by 12 nucleotidesDshi_2331 and Dshi_2332 are separated by 34 nucleotides Dshi_2329: Dshi_2329 - Tail Collar domain protein (RefSeq), at 2,459,914 to 2,460,507 _2329 Dshi_2330: Dshi_2330 - protein of unknown function DUF1194 (RefSeq), at 2,460,588 to 2,461,223 _2330 Dshi_2331: Dshi_2331 - Antibiotic biosynthesis monooxygenase (RefSeq), at 2,461,236 to 2,461,580 _2331 Dshi_2332: Dshi_2332 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 2,461,615 to 2,462,868 _2332 Position (kb) 2461 2462Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2460.339 kb on - strand, within Dshi_2329at 2460.455 kb on - strandat 2460.455 kb on - strandat 2460.460 kb on + strandat 2460.536 kb on + strandat 2460.559 kb on - strandat 2460.591 kb on + strandat 2460.611 kb on + strandat 2460.705 kb on + strand, within Dshi_2330at 2460.719 kb on - strand, within Dshi_2330at 2460.744 kb on + strand, within Dshi_2330at 2460.750 kb on + strand, within Dshi_2330at 2460.752 kb on - strand, within Dshi_2330at 2460.941 kb on + strand, within Dshi_2330at 2460.949 kb on - strand, within Dshi_2330at 2460.949 kb on - strand, within Dshi_2330at 2461.009 kb on + strand, within Dshi_2330at 2461.148 kb on + strand, within Dshi_2330at 2461.171 kb on + strandat 2461.177 kb on - strandat 2461.217 kb on + strandat 2461.225 kb on - strandat 2461.261 kb on + strandat 2461.291 kb on - strand, within Dshi_2331at 2461.292 kb on + strand, within Dshi_2331at 2461.328 kb on + strand, within Dshi_2331at 2461.337 kb on + strand, within Dshi_2331at 2461.379 kb on - strand, within Dshi_2331at 2461.379 kb on - strand, within Dshi_2331at 2461.566 kb on + strandat 2461.667 kb on - strandat 2461.798 kb on - strand, within Dshi_2332at 2461.913 kb on - strand, within Dshi_2332at 2461.915 kb on - strand, within Dshi_2332at 2461.925 kb on - strand, within Dshi_2332at 2461.980 kb on - strand, within Dshi_2332at 2461.999 kb on + strand, within Dshi_2332at 2461.999 kb on + strand, within Dshi_2332at 2462.060 kb on + strand, within Dshi_2332at 2462.136 kb on - strand, within Dshi_2332at 2462.173 kb on + strand, within Dshi_2332at 2462.173 kb on + strand, within Dshi_2332at 2462.181 kb on - strand, within Dshi_2332at 2462.186 kb on - strand, within Dshi_2332at 2462.255 kb on + strand, within Dshi_2332at 2462.255 kb on + strand, within Dshi_2332at 2462.255 kb on + strand, within Dshi_2332at 2462.263 kb on - strand, within Dshi_2332at 2462.263 kb on - strand, within Dshi_2332at 2462.263 kb on - strand, within Dshi_2332at 2462.263 kb on - strand, within Dshi_2332at 2462.263 kb on - strand, within Dshi_2332at 2462.329 kb on + strand, within Dshi_2332at 2462.329 kb on + strand, within Dshi_2332at 2462.337 kb on - strand, within Dshi_2332at 2462.367 kb on + strand, within Dshi_2332at 2462.378 kb on + strand, within Dshi_2332at 2462.388 kb on + strand, within Dshi_2332at 2462.411 kb on - strand, within Dshi_2332at 2462.420 kb on + strand, within Dshi_2332at 2462.469 kb on + strand, within Dshi_2332at 2462.489 kb on + strand, within Dshi_2332at 2462.489 kb on + strand, within Dshi_2332at 2462.535 kb on + strand, within Dshi_2332

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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2,460,339 - Dshi_2329 0.72 +0.9
2,460,455 - -0.2
2,460,455 - -0.3
2,460,460 + -1.0
2,460,536 + -1.7
2,460,559 - +0.9
2,460,591 + +2.1
2,460,611 + +0.1
2,460,705 + Dshi_2330 0.18 -0.5
2,460,719 - Dshi_2330 0.21 +2.1
2,460,744 + Dshi_2330 0.25 -0.9
2,460,750 + Dshi_2330 0.25 -0.9
2,460,752 - Dshi_2330 0.26 +1.4
2,460,941 + Dshi_2330 0.56 +2.0
2,460,949 - Dshi_2330 0.57 +0.8
2,460,949 - Dshi_2330 0.57 +4.1
2,461,009 + Dshi_2330 0.66 -2.5
2,461,148 + Dshi_2330 0.88 -0.1
2,461,171 + +2.4
2,461,177 - -0.0
2,461,217 + -1.4
2,461,225 - +1.4
2,461,261 + -1.6
2,461,291 - Dshi_2331 0.16 +1.7
2,461,292 + Dshi_2331 0.16 -1.9
2,461,328 + Dshi_2331 0.27 -0.5
2,461,337 + Dshi_2331 0.29 -0.9
2,461,379 - Dshi_2331 0.41 +2.9
2,461,379 - Dshi_2331 0.41 -1.4
2,461,566 + +0.4
2,461,667 - -2.6
2,461,798 - Dshi_2332 0.15 +1.1
2,461,913 - Dshi_2332 0.24 +2.9
2,461,915 - Dshi_2332 0.24 +0.1
2,461,925 - Dshi_2332 0.25 -1.4
2,461,980 - Dshi_2332 0.29 -0.8
2,461,999 + Dshi_2332 0.31 -0.9
2,461,999 + Dshi_2332 0.31 +1.7
2,462,060 + Dshi_2332 0.35 +0.4
2,462,136 - Dshi_2332 0.42 -0.7
2,462,173 + Dshi_2332 0.44 -1.1
2,462,173 + Dshi_2332 0.44 -1.1
2,462,181 - Dshi_2332 0.45 -1.6
2,462,186 - Dshi_2332 0.46 +0.1
2,462,255 + Dshi_2332 0.51 +0.1
2,462,255 + Dshi_2332 0.51 +2.9
2,462,255 + Dshi_2332 0.51 +0.1
2,462,263 - Dshi_2332 0.52 +1.1
2,462,263 - Dshi_2332 0.52 +0.7
2,462,263 - Dshi_2332 0.52 -0.3
2,462,263 - Dshi_2332 0.52 +1.0
2,462,263 - Dshi_2332 0.52 -0.1
2,462,329 + Dshi_2332 0.57 +2.7
2,462,329 + Dshi_2332 0.57 -0.9
2,462,337 - Dshi_2332 0.58 -2.0
2,462,367 + Dshi_2332 0.60 +1.6
2,462,378 + Dshi_2332 0.61 -1.1
2,462,388 + Dshi_2332 0.62 -1.1
2,462,411 - Dshi_2332 0.63 +1.1
2,462,420 + Dshi_2332 0.64 +0.3
2,462,469 + Dshi_2332 0.68 -0.6
2,462,489 + Dshi_2332 0.70 -2.9
2,462,489 + Dshi_2332 0.70 +2.7
2,462,535 + Dshi_2332 0.73 -0.9

Or see this region's nucleotide sequence