Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2252
Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,372,769 | - | -1.3 | |||
2,373,422 | + | -0.7 | |||
2,373,429 | - | -0.8 | |||
2,373,429 | - | +1.7 | |||
2,373,447 | - | -0.6 | |||
2,373,474 | + | -1.3 | |||
2,373,485 | + | -0.2 | |||
2,373,493 | - | -0.5 | |||
2,373,545 | - | -0.9 | |||
2,373,604 | + | -1.5 | |||
2,373,606 | - | -0.6 | |||
2,373,612 | - | -0.4 | |||
2,373,683 | + | -0.4 | |||
2,373,721 | + | -0.5 | |||
2,373,750 | - | Dshi_2253 | 0.11 | -1.1 | |
2,373,752 | + | Dshi_2253 | 0.11 | -0.6 | |
2,373,805 | - | Dshi_2253 | 0.15 | -0.0 | |
2,373,874 | + | Dshi_2253 | 0.21 | -0.3 | |
2,373,891 | + | Dshi_2253 | 0.22 | -0.9 | |
2,373,945 | + | Dshi_2253 | 0.26 | +0.8 | |
2,373,953 | - | Dshi_2253 | 0.27 | +0.2 | |
2,373,953 | - | Dshi_2253 | 0.27 | -0.4 | |
2,373,953 | - | Dshi_2253 | 0.27 | -0.3 | |
2,373,957 | + | Dshi_2253 | 0.27 | -1.0 | |
2,373,957 | + | Dshi_2253 | 0.27 | +0.2 | |
2,373,965 | - | Dshi_2253 | 0.28 | +0.6 | |
2,373,965 | - | Dshi_2253 | 0.28 | -0.8 | |
2,373,985 | + | Dshi_2253 | 0.29 | -1.1 | |
2,373,994 | + | Dshi_2253 | 0.30 | -0.2 | |
2,374,058 | + | Dshi_2253 | 0.35 | -0.8 | |
2,374,158 | - | Dshi_2253 | 0.43 | +1.3 | |
2,374,159 | + | Dshi_2253 | 0.43 | -0.7 | |
2,374,205 | - | Dshi_2253 | 0.46 | +0.6 | |
2,374,225 | + | Dshi_2253 | 0.48 | -0.4 | |
2,374,326 | + | Dshi_2253 | 0.56 | -2.4 |
Or see this region's nucleotide sequence