Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2185 and Dshi_2186 are separated by 263 nucleotides Dshi_2186 and Dshi_2187 are separated by 28 nucleotides Dshi_2187 and Dshi_2188 are separated by 12 nucleotides Dshi_2188 and Dshi_2189 are separated by 191 nucleotides
Dshi_2185: Dshi_2185 - YceI family protein (RefSeq), at 2,312,706 to 2,313,290
_2185
Dshi_2186: Dshi_2186 - ribosomal protein S6 (RefSeq), at 2,313,554 to 2,313,907
_2186
Dshi_2187: Dshi_2187 - ribosomal protein S18 (RefSeq), at 2,313,936 to 2,314,163
_2187
Dshi_2188: Dshi_2188 - ribosomal protein L9 (RefSeq), at 2,314,176 to 2,314,805
_2188
Dshi_2189: Dshi_2189 - 5'-Nucleotidase domain protein (RefSeq), at 2,314,997 to 2,316,958
_2189
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1 at 2313.072 kb on - strand, within Dshi_2185 at 2313.159 kb on + strand, within Dshi_2185 at 2313.163 kb on + strand, within Dshi_2185 at 2313.172 kb on - strand, within Dshi_2185 at 2313.264 kb on - strand at 2313.274 kb on - strand at 2313.292 kb on - strand at 2313.332 kb on - strand at 2314.403 kb on - strand, within Dshi_2188 at 2314.843 kb on + strand at 2315.073 kb on - strand at 2315.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 2,313,072 - Dshi_2185 0.63 -1.8 2,313,159 + Dshi_2185 0.77 -0.2 2,313,163 + Dshi_2185 0.78 -1.0 2,313,172 - Dshi_2185 0.80 -0.0 2,313,264 - -1.4 2,313,274 - -2.2 2,313,292 - -0.3 2,313,332 - -0.5 2,314,403 - Dshi_2188 0.36 -1.2 2,314,843 + +0.4 2,315,073 - -0.5 2,315,099 + -0.0
Or see this region's nucleotide sequence