Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2054

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2053 and Dshi_2054 are separated by 161 nucleotidesDshi_2054 and Dshi_2055 overlap by 4 nucleotidesDshi_2055 and Dshi_2056 are separated by 210 nucleotides Dshi_2053: Dshi_2053 - hypothetical protein (RefSeq), at 2,172,986 to 2,173,456 _2053 Dshi_2054: Dshi_2054 - histone deacetylase superfamily (RefSeq), at 2,173,618 to 2,174,742 _2054 Dshi_2055: Dshi_2055 - glutathione peroxidase (RefSeq), at 2,174,739 to 2,175,272 _2055 Dshi_2056: Dshi_2056 - NUDIX hydrolase (RefSeq), at 2,175,483 to 2,175,962 _2056 Position (kb) 2173 2174 2175Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2173.622 kb on - strandat 2173.685 kb on + strandat 2173.725 kb on - strandat 2173.762 kb on + strand, within Dshi_2054at 2173.765 kb on - strand, within Dshi_2054at 2173.765 kb on - strand, within Dshi_2054at 2173.770 kb on - strand, within Dshi_2054at 2173.841 kb on - strand, within Dshi_2054at 2173.870 kb on - strand, within Dshi_2054at 2174.037 kb on + strand, within Dshi_2054at 2174.055 kb on - strand, within Dshi_2054at 2174.115 kb on - strand, within Dshi_2054at 2174.141 kb on - strand, within Dshi_2054at 2174.217 kb on - strand, within Dshi_2054at 2174.441 kb on + strand, within Dshi_2054at 2174.539 kb on - strand, within Dshi_2054at 2174.539 kb on - strand, within Dshi_2054at 2174.655 kb on - strandat 2174.713 kb on + strandat 2174.872 kb on + strand, within Dshi_2055at 2174.946 kb on - strand, within Dshi_2055at 2175.008 kb on + strand, within Dshi_2055at 2175.008 kb on + strand, within Dshi_2055at 2175.026 kb on - strand, within Dshi_2055at 2175.063 kb on + strand, within Dshi_2055at 2175.075 kb on + strand, within Dshi_2055at 2175.075 kb on + strand, within Dshi_2055at 2175.251 kb on + strandat 2175.291 kb on + strandat 2175.323 kb on + strandat 2175.325 kb on + strandat 2175.326 kb on - strandat 2175.331 kb on - strandat 2175.407 kb on + strandat 2175.413 kb on + strandat 2175.469 kb on + strandat 2175.572 kb on + strand, within Dshi_2056at 2175.577 kb on - strand, within Dshi_2056at 2175.624 kb on + strand, within Dshi_2056at 2175.660 kb on - strand, within Dshi_2056

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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2,173,622 - -0.3
2,173,685 + -1.5
2,173,725 - +0.9
2,173,762 + Dshi_2054 0.13 -0.6
2,173,765 - Dshi_2054 0.13 +0.6
2,173,765 - Dshi_2054 0.13 -1.8
2,173,770 - Dshi_2054 0.14 -0.7
2,173,841 - Dshi_2054 0.20 +3.2
2,173,870 - Dshi_2054 0.22 +0.2
2,174,037 + Dshi_2054 0.37 +1.5
2,174,055 - Dshi_2054 0.39 -1.5
2,174,115 - Dshi_2054 0.44 -1.7
2,174,141 - Dshi_2054 0.46 +0.7
2,174,217 - Dshi_2054 0.53 -0.1
2,174,441 + Dshi_2054 0.73 +0.3
2,174,539 - Dshi_2054 0.82 +3.0
2,174,539 - Dshi_2054 0.82 +0.1
2,174,655 - -1.8
2,174,713 + +0.2
2,174,872 + Dshi_2055 0.25 -0.5
2,174,946 - Dshi_2055 0.39 -1.2
2,175,008 + Dshi_2055 0.50 -2.0
2,175,008 + Dshi_2055 0.50 -1.7
2,175,026 - Dshi_2055 0.54 +1.4
2,175,063 + Dshi_2055 0.61 +1.8
2,175,075 + Dshi_2055 0.63 +3.0
2,175,075 + Dshi_2055 0.63 -1.5
2,175,251 + -0.6
2,175,291 + -1.4
2,175,323 + +0.9
2,175,325 + +0.2
2,175,326 - +0.2
2,175,331 - +0.8
2,175,407 + +0.3
2,175,413 + +0.4
2,175,469 + -0.4
2,175,572 + Dshi_2056 0.19 -1.2
2,175,577 - Dshi_2056 0.20 +3.0
2,175,624 + Dshi_2056 0.29 -0.6
2,175,660 - Dshi_2056 0.37 -0.2

Or see this region's nucleotide sequence