Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2053 and Dshi_2054 are separated by 161 nucleotides Dshi_2054 and Dshi_2055 overlap by 4 nucleotides Dshi_2055 and Dshi_2056 are separated by 210 nucleotides
Dshi_2053: Dshi_2053 - hypothetical protein (RefSeq), at 2,172,986 to 2,173,456
_2053
Dshi_2054: Dshi_2054 - histone deacetylase superfamily (RefSeq), at 2,173,618 to 2,174,742
_2054
Dshi_2055: Dshi_2055 - glutathione peroxidase (RefSeq), at 2,174,739 to 2,175,272
_2055
Dshi_2056: Dshi_2056 - NUDIX hydrolase (RefSeq), at 2,175,483 to 2,175,962
_2056
Position (kb)
2173
2174
2175 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2173.622 kb on - strand at 2173.685 kb on + strand at 2173.725 kb on - strand at 2173.762 kb on + strand, within Dshi_2054 at 2173.765 kb on - strand, within Dshi_2054 at 2173.765 kb on - strand, within Dshi_2054 at 2173.770 kb on - strand, within Dshi_2054 at 2173.841 kb on - strand, within Dshi_2054 at 2173.870 kb on - strand, within Dshi_2054 at 2174.037 kb on + strand, within Dshi_2054 at 2174.055 kb on - strand, within Dshi_2054 at 2174.115 kb on - strand, within Dshi_2054 at 2174.141 kb on - strand, within Dshi_2054 at 2174.217 kb on - strand, within Dshi_2054 at 2174.441 kb on + strand, within Dshi_2054 at 2174.539 kb on - strand, within Dshi_2054 at 2174.539 kb on - strand, within Dshi_2054 at 2174.655 kb on - strand at 2174.713 kb on + strand at 2174.872 kb on + strand, within Dshi_2055 at 2174.946 kb on - strand, within Dshi_2055 at 2175.008 kb on + strand, within Dshi_2055 at 2175.008 kb on + strand, within Dshi_2055 at 2175.026 kb on - strand, within Dshi_2055 at 2175.063 kb on + strand, within Dshi_2055 at 2175.075 kb on + strand, within Dshi_2055 at 2175.075 kb on + strand, within Dshi_2055 at 2175.251 kb on + strand at 2175.291 kb on + strand at 2175.323 kb on + strand at 2175.325 kb on + strand at 2175.326 kb on - strand at 2175.331 kb on - strand at 2175.407 kb on + strand at 2175.413 kb on + strand at 2175.469 kb on + strand at 2175.572 kb on + strand, within Dshi_2056 at 2175.577 kb on - strand, within Dshi_2056 at 2175.624 kb on + strand, within Dshi_2056 at 2175.660 kb on - strand, within Dshi_2056
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 2,173,622 - -0.3 2,173,685 + -1.5 2,173,725 - +0.9 2,173,762 + Dshi_2054 0.13 -0.6 2,173,765 - Dshi_2054 0.13 +0.6 2,173,765 - Dshi_2054 0.13 -1.8 2,173,770 - Dshi_2054 0.14 -0.7 2,173,841 - Dshi_2054 0.20 +3.2 2,173,870 - Dshi_2054 0.22 +0.2 2,174,037 + Dshi_2054 0.37 +1.5 2,174,055 - Dshi_2054 0.39 -1.5 2,174,115 - Dshi_2054 0.44 -1.7 2,174,141 - Dshi_2054 0.46 +0.7 2,174,217 - Dshi_2054 0.53 -0.1 2,174,441 + Dshi_2054 0.73 +0.3 2,174,539 - Dshi_2054 0.82 +3.0 2,174,539 - Dshi_2054 0.82 +0.1 2,174,655 - -1.8 2,174,713 + +0.2 2,174,872 + Dshi_2055 0.25 -0.5 2,174,946 - Dshi_2055 0.39 -1.2 2,175,008 + Dshi_2055 0.50 -2.0 2,175,008 + Dshi_2055 0.50 -1.7 2,175,026 - Dshi_2055 0.54 +1.4 2,175,063 + Dshi_2055 0.61 +1.8 2,175,075 + Dshi_2055 0.63 +3.0 2,175,075 + Dshi_2055 0.63 -1.5 2,175,251 + -0.6 2,175,291 + -1.4 2,175,323 + +0.9 2,175,325 + +0.2 2,175,326 - +0.2 2,175,331 - +0.8 2,175,407 + +0.3 2,175,413 + +0.4 2,175,469 + -0.4 2,175,572 + Dshi_2056 0.19 -1.2 2,175,577 - Dshi_2056 0.20 +3.0 2,175,624 + Dshi_2056 0.29 -0.6 2,175,660 - Dshi_2056 0.37 -0.2
Or see this region's nucleotide sequence