Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1909

Experiment: m.b. A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. A22 0.01 mg/ml
1,993,008	-		Dshi_1908	0.55	+0.6
1,993,010	+		Dshi_1908	0.56	-1.4
1,993,018	-		Dshi_1908	0.57	-0.6
1,993,025	+		Dshi_1908	0.58	-0.0
1,993,025	+		Dshi_1908	0.58	+0.1
1,993,055	-		Dshi_1908	0.63	+0.2
1,993,057	+		Dshi_1908	0.63	+0.9
1,993,058	+		Dshi_1908	0.63	+0.6
1,993,086	+		Dshi_1908	0.68	+0.2
1,993,213	+		Dshi_1908	0.88	+0.1
1,993,218	+		Dshi_1908	0.89	-1.3
1,993,242	+				-0.4
1,993,251	+				-0.4
1,993,306	+				+0.0
1,993,355	+				+2.6
1,993,360	+				+0.3
1,993,384	+				+1.1
1,993,422	+				-1.6
1,993,447	-				-0.0
1,993,447	-				-0.6
1,993,540	+				-0.6
1,993,547	+				+1.1
1,993,555	-				-1.3
1,993,564	-				+0.0
1,993,583	+				-0.5
1,993,583	+				+1.4
1,993,585	+				-1.0
1,993,591	-				-0.6
1,993,591	-				-0.5
1,993,591	-				+2.6
1,993,632	+				-1.1
1,993,747	+				-0.6
1,993,750	-				+0.2
1,993,750	-				+0.7
1,993,759	+				+0.5
1,993,769	+				+0.9
1,993,801	+				+1.9
1,993,801	+				+1.5
1,993,801	+				+1.7
1,993,824	-				+0.7
1,993,824	-				-1.9
1,993,871	-				+0.2
1,993,871	-				+0.9
1,994,032	+		Dshi_1909	0.11	-1.0
1,994,032	+		Dshi_1909	0.11	+2.9
1,994,032	+		Dshi_1909	0.11	+0.3
1,994,032	+		Dshi_1909	0.11	-1.4
1,994,032	+		Dshi_1909	0.11	+1.0
1,994,040	-		Dshi_1909	0.12	-1.7
1,994,040	-		Dshi_1909	0.12	-2.2
1,994,055	+		Dshi_1909	0.15	+0.9
1,994,055	+		Dshi_1909	0.15	-0.3
1,994,068	-		Dshi_1909	0.17	+3.4
1,994,079	+		Dshi_1909	0.18	-0.6
1,994,081	-		Dshi_1909	0.19	+0.5
1,994,087	-		Dshi_1909	0.20	-0.2
1,994,192	-		Dshi_1909	0.36	+1.9
1,994,197	-		Dshi_1909	0.36	-1.0
1,994,216	+		Dshi_1909	0.39	+0.7
1,994,221	+		Dshi_1909	0.40	+1.3
1,994,221	+		Dshi_1909	0.40	-0.6
1,994,226	+		Dshi_1909	0.41	+0.3
1,994,239	-		Dshi_1909	0.43	+0.4
1,994,243	+		Dshi_1909	0.43	-0.5
1,994,243	+		Dshi_1909	0.43	-0.1
1,994,250	-		Dshi_1909	0.44	-1.1
1,994,251	+		Dshi_1909	0.45	-2.3
1,994,251	+		Dshi_1909	0.45	+0.5
1,994,251	+		Dshi_1909	0.45	-1.6
1,994,251	+		Dshi_1909	0.45	+2.9
1,994,251	-		Dshi_1909	0.45	-1.5
1,994,253	+		Dshi_1909	0.45	-0.6
1,994,253	+		Dshi_1909	0.45	+0.2
1,994,261	-		Dshi_1909	0.46	+2.6
1,994,261	-		Dshi_1909	0.46	+1.2
1,994,264	+		Dshi_1909	0.47	-1.1
1,994,264	+		Dshi_1909	0.47	-0.1
1,994,266	+		Dshi_1909	0.47	-0.2
1,994,271	+		Dshi_1909	0.48	+3.1
1,994,271	+		Dshi_1909	0.48	+2.9
1,994,271	+		Dshi_1909	0.48	-1.6
1,994,272	-		Dshi_1909	0.48	+0.0
1,994,276	+		Dshi_1909	0.48	+0.9
1,994,276	+		Dshi_1909	0.48	-0.0
1,994,276	+		Dshi_1909	0.48	+0.4
1,994,276	+		Dshi_1909	0.48	+2.3
1,994,276	+		Dshi_1909	0.48	-0.6
1,994,276	+		Dshi_1909	0.48	+0.8
1,994,276	+		Dshi_1909	0.48	-0.5
1,994,276	+		Dshi_1909	0.48	+0.6
1,994,276	+		Dshi_1909	0.48	-0.1
1,994,276	+		Dshi_1909	0.48	+1.1
1,994,276	+		Dshi_1909	0.48	-0.2
1,994,276	+		Dshi_1909	0.48	+1.0
1,994,281	+		Dshi_1909	0.49	-0.5
1,994,281	+		Dshi_1909	0.49	+1.5
1,994,281	+		Dshi_1909	0.49	+0.5
1,994,281	+		Dshi_1909	0.49	-0.3
1,994,281	+		Dshi_1909	0.49	+0.4
1,994,281	+		Dshi_1909	0.49	+0.1
1,994,281	+		Dshi_1909	0.49	+0.1
1,994,281	+		Dshi_1909	0.49	+0.9
1,994,281	+		Dshi_1909	0.49	-0.1
1,994,281	+		Dshi_1909	0.49	-0.1
1,994,281	+		Dshi_1909	0.49	+2.6
1,994,281	+		Dshi_1909	0.49	+0.2
1,994,281	+		Dshi_1909	0.49	-0.1
1,994,281	+		Dshi_1909	0.49	+0.3
1,994,281	+		Dshi_1909	0.49	-0.0
1,994,281	+		Dshi_1909	0.49	-0.1
1,994,284	-		Dshi_1909	0.50	+1.7
1,994,284	-		Dshi_1909	0.50	-1.2
1,994,284	-		Dshi_1909	0.50	-0.3
1,994,284	-		Dshi_1909	0.50	+1.6
1,994,284	-		Dshi_1909	0.50	+0.3
1,994,284	-		Dshi_1909	0.50	+1.4
1,994,284	-		Dshi_1909	0.50	-0.2
1,994,284	-		Dshi_1909	0.50	+0.3
1,994,284	-		Dshi_1909	0.50	+2.5
1,994,284	-		Dshi_1909	0.50	+0.3
1,994,284	-		Dshi_1909	0.50	+0.3
1,994,284	-		Dshi_1909	0.50	-0.2
1,994,284	-		Dshi_1909	0.50	+0.1
1,994,284	-		Dshi_1909	0.50	-1.6
1,994,284	-		Dshi_1909	0.50	-0.3
1,994,284	-		Dshi_1909	0.50	+0.6
1,994,284	-		Dshi_1909	0.50	-0.5
1,994,284	-		Dshi_1909	0.50	+0.4
1,994,286	+		Dshi_1909	0.50	+1.5
1,994,286	+		Dshi_1909	0.50	+0.7
1,994,289	-		Dshi_1909	0.50	-0.1
1,994,289	-		Dshi_1909	0.50	+4.4
1,994,289	-		Dshi_1909	0.50	-0.3
1,994,289	-		Dshi_1909	0.50	-1.5
1,994,289	-		Dshi_1909	0.50	-0.1
1,994,289	-		Dshi_1909	0.50	+1.7
1,994,289	-		Dshi_1909	0.50	-0.4
1,994,289	-		Dshi_1909	0.50	+0.8
1,994,294	-		Dshi_1909	0.51	+0.3
1,994,294	-		Dshi_1909	0.51	-0.0
1,994,300	+		Dshi_1909	0.52	+0.0
1,994,300	+		Dshi_1909	0.52	+0.0
1,994,308	+		Dshi_1909	0.53	-1.0
1,994,308	-		Dshi_1909	0.53	+1.9
1,994,319	+		Dshi_1909	0.55	+1.4
1,994,319	+		Dshi_1909	0.55	-0.3
1,994,319	+		Dshi_1909	0.55	-0.4
1,994,319	+		Dshi_1909	0.55	-0.4
1,994,327	-		Dshi_1909	0.56	+0.9
1,994,327	-		Dshi_1909	0.56	-1.1
1,994,327	-		Dshi_1909	0.56	+0.7
1,994,327	-		Dshi_1909	0.56	+0.8
1,994,327	-		Dshi_1909	0.56	+1.0
1,994,327	-		Dshi_1909	0.56	-1.4
1,994,343	+		Dshi_1909	0.59	-1.1
1,994,343	+		Dshi_1909	0.59	+2.9
1,994,344	-		Dshi_1909	0.59	+0.7
1,994,346	+		Dshi_1909	0.59	-0.3
1,994,346	+		Dshi_1909	0.59	-0.6
1,994,351	-		Dshi_1909	0.60	+0.6
1,994,353	-		Dshi_1909	0.60	+0.7
1,994,354	-		Dshi_1909	0.60	+0.6
1,994,355	+		Dshi_1909	0.61	+0.9
1,994,363	-		Dshi_1909	0.62	+0.7
1,994,367	+		Dshi_1909	0.62	+0.6
1,994,370	-		Dshi_1909	0.63	+1.0
1,994,372	+		Dshi_1909	0.63	+0.7
1,994,372	+		Dshi_1909	0.63	+0.6
1,994,380	-		Dshi_1909	0.64	-0.8
1,994,380	-		Dshi_1909	0.64	+0.2
1,994,406	-		Dshi_1909	0.68	-1.7
1,994,406	-		Dshi_1909	0.68	-0.6
1,994,413	+		Dshi_1909	0.69	+0.1
1,994,414	-		Dshi_1909	0.70	+0.9
1,994,421	-		Dshi_1909	0.71	-0.1
1,994,421	-		Dshi_1909	0.71	-1.0
1,994,421	-		Dshi_1909	0.71	-0.3
1,994,426	+		Dshi_1909	0.71	+0.1
1,994,461	+		Dshi_1909	0.77	-1.8
1,994,462	-		Dshi_1909	0.77	+1.9
1,994,493	+		Dshi_1909	0.82	-0.6
1,994,493	+		Dshi_1909	0.82	-0.3
1,994,523	-		Dshi_1909	0.86	+0.0
1,994,523	-		Dshi_1909	0.86	-0.7
1,994,523	-		Dshi_1909	0.86	+0.2
1,994,523	-		Dshi_1909	0.86	-0.7
1,994,528	+		Dshi_1909	0.87	-0.3
1,994,530	+		Dshi_1909	0.87	-0.3
1,994,530	+		Dshi_1909	0.87	-0.3
1,994,530	+		Dshi_1909	0.87	+1.7
1,994,530	+		Dshi_1909	0.87	+1.5
1,994,530	+		Dshi_1909	0.87	+0.4
1,994,530	+		Dshi_1909	0.87	+3.7
1,994,530	+		Dshi_1909	0.87	+0.5
1,994,530	+		Dshi_1909	0.87	-0.1
1,994,530	+		Dshi_1909	0.87	+0.1
1,994,536	-		Dshi_1909	0.88	-0.7
1,994,538	-		Dshi_1909	0.89	+0.6
1,994,538	-		Dshi_1909	0.89	+0.3
1,994,538	-		Dshi_1909	0.89	+0.5
1,994,538	-		Dshi_1909	0.89	+1.3
1,994,538	-		Dshi_1909	0.89	+1.4
1,994,538	-		Dshi_1909	0.89	-0.5
1,994,538	-		Dshi_1909	0.89	+2.1
1,994,538	-		Dshi_1909	0.89	+0.4
1,994,538	-		Dshi_1909	0.89	+0.1
1,994,540	+		Dshi_1909	0.89	+0.7
1,994,540	+		Dshi_1909	0.89	+2.3
1,994,540	+		Dshi_1909	0.89	+1.2
1,994,540	+		Dshi_1909	0.89	+0.1
1,994,540	+		Dshi_1909	0.89	+1.7
1,994,540	+		Dshi_1909	0.89	-0.1
1,994,548	-				+1.1
1,994,548	-				+1.3
1,994,548	-				+1.0
1,994,548	-				-0.5
1,994,564	-				-0.7
1,994,565	-				+2.3
1,994,568	-				-3.0
1,994,572	+				-1.0
1,994,583	+				-0.8
1,994,591	-				-0.8
1,994,591	-				+0.3
1,994,598	+				+0.2
1,994,598	+				-0.3
1,994,598	+				+0.3
1,994,598	+				+0.8
1,994,598	+				+1.4
1,994,598	+				-0.1
1,994,598	+				+0.9
1,994,598	+				+0.7
1,994,598	+				-0.7
1,994,598	+				+0.2
1,994,598	+				+0.5
1,994,598	+				-0.4
1,994,598	+				-0.3
1,994,598	+				-0.2
1,994,598	+				-1.1
1,994,598	+				-0.2
1,994,598	+				+0.9
1,994,598	+				-0.1
1,994,601	-				+0.5
1,994,606	-				-0.5
1,994,606	-				-0.4
1,994,606	-				-0.3
1,994,606	-				-0.8
1,994,606	-				-0.3
1,994,606	-				-0.4
1,994,606	-				+0.3
1,994,606	-				-0.5
1,994,606	-				-1.2
1,994,606	-				-0.0
1,994,606	-				+0.2
1,994,606	-				-0.3
1,994,606	-				-0.4
1,994,606	-				+0.8
1,994,606	-				+1.6
1,994,621	+				-0.4
1,994,629	-				+0.1
1,994,664	+				-0.0
1,994,675	+				-0.4
1,994,683	-				+0.3
1,994,690	+				-0.6
1,994,690	+				-0.1
1,994,690	+				-0.3
1,994,690	+				+0.9
1,994,694	+				+0.3
1,994,698	-				+3.4
1,994,723	+				+0.3
1,994,724	+				+0.7
1,994,725	+				-0.6
1,994,725	+				-0.8
1,994,725	+				-0.1
1,994,725	+				-0.2
1,994,725	+				+0.4
1,994,725	+				+0.5
1,994,725	+				+0.9
1,994,725	+				-0.2
1,994,725	+				+0.8
1,994,725	+				+0.1
1,994,725	+				+0.5
1,994,725	+				+0.1
1,994,725	+				+0.1
1,994,725	+				+0.1
1,994,725	+				-2.0
1,994,725	+				-0.1
1,994,725	+				+0.3
1,994,725	+				+3.3
1,994,725	+				+0.2
1,994,725	+				+0.3
1,994,725	+				+1.6
1,994,725	+				+0.3
1,994,725	+				+0.2
1,994,725	+				-0.9
1,994,725	+				+0.8
1,994,725	+				-1.3
1,994,725	+				+0.1
1,994,725	+				-0.3
1,994,725	+				+0.6
1,994,725	+				+0.3
1,994,725	+				+0.9
1,994,725	+				+0.0
1,994,725	+				+0.7
1,994,725	+				-0.2
1,994,725	+				+0.1
1,994,725	+				+1.4
1,994,725	+				+0.1
1,994,725	+				-0.4
1,994,725	+				+0.7
1,994,725	+				-0.2
1,994,725	+				-1.0
1,994,725	+				-0.1
1,994,725	+				+1.9
1,994,725	+				+1.3
1,994,725	+				+1.0
1,994,725	+				+0.6
1,994,725	+				+0.4
1,994,725	+				+1.4
1,994,725	+				+0.3
1,994,725	+				-2.0
1,994,725	+				+0.3
1,994,731	-				-0.6
1,994,731	-				+4.0
1,994,732	-				+0.4
1,994,732	-				+0.9
1,994,733	-				+0.6
1,994,733	-				+0.1
1,994,733	-				+3.9
1,994,733	-				-0.4
1,994,733	-				-0.0
1,994,733	-				+0.1
1,994,733	-				+2.1
1,994,733	-				-0.6
1,994,733	-				-0.4
1,994,733	-				-1.8
1,994,733	-				+0.8
1,994,733	-				+0.5
1,994,733	-				-0.1
1,994,733	-				-1.0
1,994,733	-				+0.5
1,994,733	-				+0.6
1,994,733	-				-0.1
1,994,733	-				-0.0
1,994,733	-				+0.1
1,994,733	-				+0.0
1,994,733	-				-0.4
1,994,733	-				+0.1
1,994,733	-				+1.7
1,994,733	-				+0.5
1,994,733	-				+0.3
1,994,733	-				-0.0
1,994,733	-				-0.1
1,994,733	-				-0.6
1,994,733	-				-0.9
1,994,733	-				+4.3
1,994,733	-				-1.7
1,994,733	-				+0.3
1,994,733	-				+2.5
1,994,733	-				+0.4
1,994,733	-				+3.7
1,994,733	-				-0.8
1,994,733	-				+3.1
1,994,733	-				+0.7
1,994,733	-				+0.1
1,994,733	-				-0.3
1,994,733	-				-0.2
1,994,733	-				-0.6
1,994,733	-				+0.2
1,994,733	-				+1.3
1,994,733	-				-1.7
1,994,733	-				-0.1
1,994,733	-				-1.3
1,994,733	-				+1.3
1,994,733	-				-0.3
1,994,733	-				-0.0
1,994,733	-				-0.9
1,994,733	-				+1.1
1,994,733	-				+1.2
1,994,733	-				-0.6
1,994,735	-				-0.9
1,994,740	-				-0.1
1,994,746	+				+1.8
1,994,746	+				+0.1
1,994,746	+				-0.2
1,994,746	+				-1.5
1,994,746	+				+0.5
1,994,746	+				-1.7
1,994,746	+				-0.3
1,994,746	+				+2.2
1,994,746	+				+0.1
1,994,746	+				-0.7
1,994,751	+				-0.7
1,994,751	+				-0.3
1,994,751	+				+1.5
1,994,752	+				+2.4
1,994,754	-				-0.4
1,994,754	-				-1.0
1,994,754	-				-0.2
1,994,754	-				-0.2
1,994,754	-				+2.9
1,994,754	-				+1.5
1,994,757	+				+0.5
1,994,757	+				+0.2
1,994,757	+				+0.6
1,994,779	+				+1.0
1,994,779	+				-0.9
1,994,790	+				+1.0
1,994,793	-				-0.1
1,994,798	-				+0.2
1,994,798	-				+0.4
1,994,801	-				+0.1
1,994,804	-				-0.2
1,994,835	+				-0.2
1,994,843	-				-0.7
1,994,843	-				+2.3
1,994,843	-				+0.6
1,994,844	-				-0.2
1,994,845	+				+0.0
1,994,850	+				-2.5
1,994,850	+				+0.7
1,994,853	-				+0.5
1,994,871	-				-1.7
1,994,871	-				+0.1
1,994,895	-				+0.7
1,994,895	-				+1.2
1,994,905	+				-0.9
1,994,911	-				+0.1
1,994,949	+				+1.9
1,994,983	+				-0.3
1,994,983	+				+1.3
1,994,983	+				-1.7
1,994,991	-				-0.2
1,994,991	-				+0.1
1,995,010	+				-0.3
1,995,019	-				-0.1
1,995,026	-				+1.3
1,995,031	+				-0.4
1,995,039	-				-0.1
1,995,052	+				+0.3
1,995,053	+				+0.0
1,995,070	+				+0.9
1,995,080	+				-0.0
1,995,080	+				-0.1
1,995,122	-				-1.8
1,995,130	-				-0.7
1,995,191	+				+0.5
1,995,197	-				+0.6
1,995,197	-				+0.8
1,995,222	+				+0.2
1,995,228	+				-1.7
1,995,230	-				+0.4
1,995,272	-				-0.9
1,995,272	-				-0.6
1,995,279	+				-1.6
1,995,292	+				-2.4
1,995,292	+				+3.0
1,995,292	+				+0.3
1,995,292	+				+0.9
1,995,292	+				+0.1
1,995,300	-				+0.2
1,995,300	-				-1.0
1,995,300	-				+0.2
1,995,314	+				+0.7
1,995,324	+				+0.1
1,995,332	-				+0.0
1,995,332	-				-0.0
1,995,334	-				-0.3
1,995,342	-		Dshi_1910	0.11	-0.4
1,995,342	-		Dshi_1910	0.11	-0.3
1,995,353	-		Dshi_1910	0.12	-0.0
1,995,371	+		Dshi_1910	0.15	+0.0
1,995,379	-		Dshi_1910	0.16	-1.2
1,995,388	-		Dshi_1910	0.18	+0.6
1,995,414	-		Dshi_1910	0.21	-1.1
1,995,446	-		Dshi_1910	0.26	+0.4
1,995,465	+		Dshi_1910	0.29	-0.6
1,995,482	+		Dshi_1910	0.31	-0.7
1,995,507	+		Dshi_1910	0.35	-0.1
1,995,515	-		Dshi_1910	0.36	-2.7
1,995,528	+		Dshi_1910	0.38	+3.1
1,995,573	+		Dshi_1910	0.45	+0.2