Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1858

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1856 and Dshi_1857 are separated by 10 nucleotidesDshi_1857 and Dshi_1858 overlap by 8 nucleotidesDshi_1858 and Dshi_1859 are separated by 1 nucleotides Dshi_1856: Dshi_1856 - protein of unknown function DUF498 (RefSeq), at 1,935,699 to 1,936,058 _1856 Dshi_1857: Dshi_1857 - protein of unknown function DUF81 (RefSeq), at 1,936,069 to 1,936,821 _1857 Dshi_1858: Dshi_1858 - protein-export membrane protein SecF (RefSeq), at 1,936,814 to 1,937,776 _1858 Dshi_1859: Dshi_1859 - protein-export membrane protein SecD (RefSeq), at 1,937,778 to 1,939,442 _1859 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -1 0 1 2at 1936.003 kb on + strand, within Dshi_1856at 1936.004 kb on + strand, within Dshi_1856at 1936.011 kb on + strand, within Dshi_1856at 1936.138 kb on - strandat 1936.332 kb on - strand, within Dshi_1857at 1936.575 kb on - strand, within Dshi_1857

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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1,936,003 + Dshi_1856 0.84 +0.2
1,936,004 + Dshi_1856 0.85 -1.0
1,936,011 + Dshi_1856 0.87 +0.3
1,936,138 - +2.3
1,936,332 - Dshi_1857 0.35 +1.3
1,936,575 - Dshi_1857 0.67 +1.3

Or see this region's nucleotide sequence