Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1769 and Dshi_1770 are separated by 126 nucleotides Dshi_1770 and Dshi_1771 are separated by 135 nucleotides Dshi_1771 and Dshi_1772 overlap by 4 nucleotides Dshi_1772 and Dshi_1773 are separated by 195 nucleotides
Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505
_1769
Dshi_1770: Dshi_1770 - hypothetical protein (RefSeq), at 1,837,632 to 1,837,898
_1770
Dshi_1771: Dshi_1771 - hypothetical protein (RefSeq), at 1,838,034 to 1,839,236
_1771
Dshi_1772: Dshi_1772 - hypothetical protein (RefSeq), at 1,839,233 to 1,839,772
_1772
Dshi_1773: Dshi_1773 - peptidase M48 Ste24p (RefSeq), at 1,839,968 to 1,840,660
_1773
Position (kb)
1838
1839
1840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1837.162 kb on - strand, within Dshi_1769 at 1837.364 kb on - strand at 1837.437 kb on - strand at 1837.595 kb on - strand at 1837.606 kb on - strand at 1837.618 kb on + strand at 1837.626 kb on - strand at 1837.690 kb on + strand, within Dshi_1770 at 1837.758 kb on - strand, within Dshi_1770 at 1837.795 kb on + strand, within Dshi_1770 at 1837.886 kb on - strand at 1837.946 kb on - strand at 1838.073 kb on + strand at 1838.322 kb on - strand, within Dshi_1771 at 1838.403 kb on - strand, within Dshi_1771 at 1838.432 kb on - strand, within Dshi_1771 at 1838.608 kb on - strand, within Dshi_1771 at 1838.816 kb on - strand, within Dshi_1771 at 1838.935 kb on + strand, within Dshi_1771 at 1838.983 kb on - strand, within Dshi_1771 at 1839.336 kb on - strand, within Dshi_1772 at 1839.477 kb on + strand, within Dshi_1772 at 1839.485 kb on - strand, within Dshi_1772 at 1839.485 kb on - strand, within Dshi_1772 at 1839.487 kb on + strand, within Dshi_1772 at 1839.861 kb on + strand at 1840.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 1,837,162 - Dshi_1769 0.81 +1.1 1,837,364 - +0.1 1,837,437 - +1.1 1,837,595 - -0.6 1,837,606 - +1.1 1,837,618 + -3.4 1,837,626 - +1.6 1,837,690 + Dshi_1770 0.22 +2.6 1,837,758 - Dshi_1770 0.47 +1.6 1,837,795 + Dshi_1770 0.61 -0.9 1,837,886 - -0.6 1,837,946 - +1.3 1,838,073 + -1.3 1,838,322 - Dshi_1771 0.24 -1.8 1,838,403 - Dshi_1771 0.31 +0.1 1,838,432 - Dshi_1771 0.33 -1.2 1,838,608 - Dshi_1771 0.48 +3.1 1,838,816 - Dshi_1771 0.65 -0.2 1,838,935 + Dshi_1771 0.75 -1.5 1,838,983 - Dshi_1771 0.79 -1.9 1,839,336 - Dshi_1772 0.19 +0.1 1,839,477 + Dshi_1772 0.45 -0.2 1,839,485 - Dshi_1772 0.47 +0.1 1,839,485 - Dshi_1772 0.47 -2.9 1,839,487 + Dshi_1772 0.47 -2.5 1,839,861 + -2.4 1,840,034 - -3.2
Or see this region's nucleotide sequence