Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1767 and Dshi_1768 are separated by 181 nucleotides Dshi_1768 and Dshi_1769 are separated by 11 nucleotides Dshi_1769 and Dshi_1770 are separated by 126 nucleotides Dshi_1770 and Dshi_1771 are separated by 135 nucleotides
Dshi_1767: Dshi_1767 - hypothetical protein (RefSeq), at 1,834,326 to 1,834,865
_1767
Dshi_1768: Dshi_1768 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq), at 1,835,047 to 1,835,688
_1768
Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505
_1769
Dshi_1770: Dshi_1770 - hypothetical protein (RefSeq), at 1,837,632 to 1,837,898
_1770
Dshi_1771: Dshi_1771 - hypothetical protein (RefSeq), at 1,838,034 to 1,839,236
_1771
Position (kb)
1835
1836
1837
1838 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1834.847 kb on - strand at 1834.947 kb on - strand at 1834.947 kb on - strand at 1834.963 kb on + strand at 1834.995 kb on + strand at 1835.037 kb on - strand at 1835.585 kb on + strand, within Dshi_1768 at 1836.070 kb on + strand, within Dshi_1769 at 1836.147 kb on - strand, within Dshi_1769 at 1836.172 kb on + strand, within Dshi_1769 at 1836.265 kb on - strand, within Dshi_1769 at 1836.265 kb on - strand, within Dshi_1769 at 1836.436 kb on + strand, within Dshi_1769 at 1836.490 kb on + strand, within Dshi_1769 at 1836.749 kb on - strand, within Dshi_1769 at 1836.878 kb on + strand, within Dshi_1769 at 1837.162 kb on - strand, within Dshi_1769 at 1837.364 kb on - strand at 1837.437 kb on - strand at 1837.595 kb on - strand at 1837.606 kb on - strand at 1837.618 kb on + strand at 1837.626 kb on - strand at 1837.690 kb on + strand, within Dshi_1770 at 1837.758 kb on - strand, within Dshi_1770 at 1837.795 kb on + strand, within Dshi_1770 at 1837.886 kb on - strand at 1837.946 kb on - strand at 1838.073 kb on + strand at 1838.322 kb on - strand, within Dshi_1771 at 1838.403 kb on - strand, within Dshi_1771 at 1838.432 kb on - strand, within Dshi_1771
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 1,834,847 - -0.8 1,834,947 - -3.3 1,834,947 - -1.7 1,834,963 + -0.5 1,834,995 + +1.0 1,835,037 - -1.8 1,835,585 + Dshi_1768 0.84 -1.3 1,836,070 + Dshi_1769 0.20 -0.4 1,836,147 - Dshi_1769 0.25 -2.4 1,836,172 + Dshi_1769 0.26 +1.1 1,836,265 - Dshi_1769 0.31 +0.1 1,836,265 - Dshi_1769 0.31 +0.1 1,836,436 + Dshi_1769 0.41 -0.9 1,836,490 + Dshi_1769 0.44 -0.4 1,836,749 - Dshi_1769 0.58 +0.1 1,836,878 + Dshi_1769 0.65 -2.1 1,837,162 - Dshi_1769 0.81 +1.1 1,837,364 - +0.1 1,837,437 - +1.1 1,837,595 - -0.6 1,837,606 - +1.1 1,837,618 + -3.4 1,837,626 - +1.6 1,837,690 + Dshi_1770 0.22 +2.6 1,837,758 - Dshi_1770 0.47 +1.6 1,837,795 + Dshi_1770 0.61 -0.9 1,837,886 - -0.6 1,837,946 - +1.3 1,838,073 + -1.3 1,838,322 - Dshi_1771 0.24 -1.8 1,838,403 - Dshi_1771 0.31 +0.1 1,838,432 - Dshi_1771 0.33 -1.2
Or see this region's nucleotide sequence