Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1735

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1733 and Dshi_1734 are separated by 251 nucleotidesDshi_1734 and Dshi_1735 are separated by 51 nucleotidesDshi_1735 and Dshi_1736 are separated by 3 nucleotidesDshi_1736 and Dshi_1737 are separated by 1 nucleotides Dshi_1733: Dshi_1733 - peptide chain release factor 1 (RefSeq), at 1,799,734 to 1,800,789 _1733 Dshi_1734: Dshi_1734 - hypothetical protein (RefSeq), at 1,801,041 to 1,801,505 _1734 Dshi_1735: Dshi_1735 - putative agmatinase (RefSeq), at 1,801,557 to 1,802,531 _1735 Dshi_1736: Dshi_1736 - protein of unknown function DUF710 (RefSeq), at 1,802,535 to 1,802,939 _1736 Dshi_1737: Dshi_1737 - hypothetical protein (RefSeq), at 1,802,941 to 1,803,369 _1737 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1800.821 kb on + strandat 1801.125 kb on + strand, within Dshi_1734at 1801.240 kb on - strand, within Dshi_1734at 1801.361 kb on - strand, within Dshi_1734at 1801.474 kb on + strandat 1801.518 kb on + strandat 1801.521 kb on - strandat 1801.521 kb on - strandat 1801.568 kb on - strandat 1801.578 kb on - strandat 1801.585 kb on - strandat 1801.755 kb on - strand, within Dshi_1735at 1801.784 kb on + strand, within Dshi_1735at 1801.818 kb on + strand, within Dshi_1735at 1801.837 kb on + strand, within Dshi_1735at 1801.991 kb on + strand, within Dshi_1735at 1802.532 kb on + strandat 1802.613 kb on - strand, within Dshi_1736at 1802.912 kb on + strandat 1803.096 kb on + strand, within Dshi_1737at 1803.201 kb on - strand, within Dshi_1737at 1803.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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1,800,821 + +0.1
1,801,125 + Dshi_1734 0.18 -0.5
1,801,240 - Dshi_1734 0.43 +1.3
1,801,361 - Dshi_1734 0.69 -2.1
1,801,474 + -0.5
1,801,518 + -1.6
1,801,521 - -0.5
1,801,521 - +0.7
1,801,568 - -1.6
1,801,578 - -1.6
1,801,585 - +1.7
1,801,755 - Dshi_1735 0.20 +1.5
1,801,784 + Dshi_1735 0.23 -1.4
1,801,818 + Dshi_1735 0.27 +1.2
1,801,837 + Dshi_1735 0.29 +1.1
1,801,991 + Dshi_1735 0.45 -2.8
1,802,532 + +0.1
1,802,613 - Dshi_1736 0.19 -1.9
1,802,912 + -2.8
1,803,096 + Dshi_1737 0.36 -2.3
1,803,201 - Dshi_1737 0.61 +1.1
1,803,397 - -3.8

Or see this region's nucleotide sequence