Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1711

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1709 and Dshi_1710 are separated by 230 nucleotidesDshi_1710 and Dshi_1711 overlap by 8 nucleotidesDshi_1711 and Dshi_1712 overlap by 1 nucleotidesDshi_1712 and Dshi_1713 are separated by 98 nucleotides Dshi_1709: Dshi_1709 - MscS Mechanosensitive ion channel (RefSeq), at 1,776,333 to 1,777,817 _1709 Dshi_1710: Dshi_1710 - glutaredoxin-like protein (RefSeq), at 1,778,048 to 1,778,410 _1710 Dshi_1711: Dshi_1711 - hypothetical protein (RefSeq), at 1,778,403 to 1,778,669 _1711 Dshi_1712: Dshi_1712 - BolA family protein (RefSeq), at 1,778,669 to 1,778,902 _1712 Dshi_1713: Dshi_1713 - phosphoribosylformylglycinamidine synthase II (RefSeq), at 1,779,001 to 1,781,172 _1713 Position (kb) 1778 1779Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1777.443 kb on - strand, within Dshi_1709at 1777.572 kb on - strand, within Dshi_1709at 1777.647 kb on + strand, within Dshi_1709at 1777.806 kb on - strandat 1777.893 kb on + strandat 1778.098 kb on - strand, within Dshi_1710at 1778.420 kb on - strandat 1778.610 kb on + strand, within Dshi_1711at 1778.662 kb on - strandat 1778.964 kb on + strandat 1779.024 kb on + strandat 1779.405 kb on - strand, within Dshi_1713at 1779.525 kb on + strand, within Dshi_1713at 1779.576 kb on + strand, within Dshi_1713

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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1,777,443 - Dshi_1709 0.75 +1.6
1,777,572 - Dshi_1709 0.83 -2.5
1,777,647 + Dshi_1709 0.88 +0.2
1,777,806 - -4.5
1,777,893 + -1.4
1,778,098 - Dshi_1710 0.14 +2.1
1,778,420 - -0.1
1,778,610 + Dshi_1711 0.78 -3.2
1,778,662 - -1.4
1,778,964 + +0.1
1,779,024 + +2.4
1,779,405 - Dshi_1713 0.19 -0.9
1,779,525 + Dshi_1713 0.24 +0.5
1,779,576 + Dshi_1713 0.26 -0.8

Or see this region's nucleotide sequence