Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1705
Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,772,751 | + | Dshi_1704 | 0.22 | -0.4 | |
1,772,792 | - | Dshi_1704 | 0.26 | -2.2 | |
1,772,807 | - | Dshi_1704 | 0.27 | +0.5 | |
1,772,822 | + | Dshi_1704 | 0.29 | -3.5 | |
1,773,205 | - | +0.0 | |||
1,773,314 | - | Dshi_1704 | 0.75 | -1.7 | |
1,773,364 | - | Dshi_1704 | 0.79 | -3.4 | |
1,773,392 | + | Dshi_1704 | 0.82 | -1.4 | |
1,773,445 | + | Dshi_1704 | 0.87 | -0.3 | |
1,773,449 | + | Dshi_1704 | 0.87 | +0.0 | |
1,773,476 | + | Dshi_1704 | 0.90 | +0.0 | |
1,773,586 | - | -0.5 | |||
1,773,618 | - | +1.6 | |||
1,773,838 | + | Dshi_1705 | 0.66 | -3.1 | |
1,773,851 | - | Dshi_1705 | 0.70 | +2.6 | |
1,773,851 | - | Dshi_1705 | 0.70 | +0.0 | |
1,773,858 | + | Dshi_1705 | 0.72 | +0.0 | |
1,773,973 | + | Dshi_1706 | 0.12 | -2.1 | |
1,773,997 | + | Dshi_1706 | 0.18 | +0.0 | |
1,774,025 | + | Dshi_1706 | 0.24 | +2.0 | |
1,774,265 | - | Dshi_1706 | 0.77 | +0.6 | |
1,774,390 | - | +0.0 | |||
1,774,392 | + | -2.7 | |||
1,774,671 | + | Dshi_1707 | 0.38 | -1.3 | |
1,774,763 | + | Dshi_1707 | 0.50 | -1.0 | |
1,774,782 | - | Dshi_1707 | 0.52 | +3.0 |
Or see this region's nucleotide sequence