Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1604 and Dshi_1605 are separated by 6 nucleotides Dshi_1605 and Dshi_1606 are separated by 160 nucleotides Dshi_1606 and Dshi_1607 are separated by 49 nucleotides
Dshi_1604: Dshi_1604 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,667,840 to 1,668,634
_1604
Dshi_1605: Dshi_1605 - Lytic transglycosylase catalytic (RefSeq), at 1,668,641 to 1,669,249
_1605
Dshi_1606: Dshi_1606 - single-strand binding protein (RefSeq), at 1,669,410 to 1,669,916
_1606
Dshi_1607: Dshi_1607 - hypothetical protein (RefSeq), at 1,669,966 to 1,671,222
_1607
Position (kb)
1669
1670 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1668.413 kb on - strand, within Dshi_1604 at 1668.457 kb on + strand, within Dshi_1604 at 1668.457 kb on + strand, within Dshi_1604 at 1668.639 kb on + strand at 1668.743 kb on - strand, within Dshi_1605 at 1668.900 kb on + strand, within Dshi_1605 at 1668.900 kb on + strand, within Dshi_1605 at 1668.908 kb on - strand, within Dshi_1605 at 1668.922 kb on + strand, within Dshi_1605 at 1668.996 kb on - strand, within Dshi_1605 at 1669.000 kb on + strand, within Dshi_1605 at 1669.105 kb on + strand, within Dshi_1605 at 1669.113 kb on - strand, within Dshi_1605 at 1669.192 kb on - strand at 1669.258 kb on + strand at 1669.266 kb on - strand at 1669.923 kb on - strand at 1669.973 kb on + strand at 1670.037 kb on + strand at 1670.143 kb on + strand, within Dshi_1607 at 1670.300 kb on - strand, within Dshi_1607 at 1670.380 kb on + strand, within Dshi_1607 at 1670.400 kb on + strand, within Dshi_1607 at 1670.473 kb on + strand, within Dshi_1607 at 1670.476 kb on - strand, within Dshi_1607 at 1670.629 kb on - strand, within Dshi_1607 at 1670.631 kb on - strand, within Dshi_1607 at 1670.647 kb on + strand, within Dshi_1607 at 1670.652 kb on + strand, within Dshi_1607 at 1670.655 kb on - strand, within Dshi_1607 at 1670.660 kb on - strand, within Dshi_1607 at 1670.715 kb on + strand, within Dshi_1607 at 1670.723 kb on + strand, within Dshi_1607 at 1670.730 kb on - strand, within Dshi_1607 at 1670.758 kb on - strand, within Dshi_1607 at 1670.791 kb on + strand, within Dshi_1607 at 1670.799 kb on - strand, within Dshi_1607 at 1670.799 kb on - strand, within Dshi_1607 at 1670.800 kb on - strand, within Dshi_1607 at 1670.813 kb on + strand, within Dshi_1607 at 1670.831 kb on + strand, within Dshi_1607 at 1670.839 kb on - strand, within Dshi_1607 at 1670.853 kb on - strand, within Dshi_1607 at 1670.878 kb on + strand, within Dshi_1607 at 1670.883 kb on + strand, within Dshi_1607 at 1670.883 kb on + strand, within Dshi_1607 at 1670.883 kb on + strand, within Dshi_1607 at 1670.883 kb on + strand, within Dshi_1607 at 1670.886 kb on - strand, within Dshi_1607 at 1670.886 kb on - strand, within Dshi_1607 at 1670.891 kb on - strand, within Dshi_1607 at 1670.891 kb on - strand, within Dshi_1607 at 1670.893 kb on + strand, within Dshi_1607 at 1670.893 kb on + strand, within Dshi_1607 at 1670.914 kb on + strand, within Dshi_1607
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 1,668,413 - Dshi_1604 0.72 +0.2 1,668,457 + Dshi_1604 0.78 +0.9 1,668,457 + Dshi_1604 0.78 -0.1 1,668,639 + +0.5 1,668,743 - Dshi_1605 0.17 -0.2 1,668,900 + Dshi_1605 0.43 +0.3 1,668,900 + Dshi_1605 0.43 -0.3 1,668,908 - Dshi_1605 0.44 -0.6 1,668,922 + Dshi_1605 0.46 -0.6 1,668,996 - Dshi_1605 0.58 +1.4 1,669,000 + Dshi_1605 0.59 +1.0 1,669,105 + Dshi_1605 0.76 +1.3 1,669,113 - Dshi_1605 0.78 +1.1 1,669,192 - -0.6 1,669,258 + +1.3 1,669,266 - -1.3 1,669,923 - -0.4 1,669,973 + +0.1 1,670,037 + +3.0 1,670,143 + Dshi_1607 0.14 +0.4 1,670,300 - Dshi_1607 0.27 -0.0 1,670,380 + Dshi_1607 0.33 +0.8 1,670,400 + Dshi_1607 0.35 -0.8 1,670,473 + Dshi_1607 0.40 -1.7 1,670,476 - Dshi_1607 0.41 +0.7 1,670,629 - Dshi_1607 0.53 -0.1 1,670,631 - Dshi_1607 0.53 -1.0 1,670,647 + Dshi_1607 0.54 -1.5 1,670,652 + Dshi_1607 0.55 -1.4 1,670,655 - Dshi_1607 0.55 -0.4 1,670,660 - Dshi_1607 0.55 -1.3 1,670,715 + Dshi_1607 0.60 -1.1 1,670,723 + Dshi_1607 0.60 +0.8 1,670,730 - Dshi_1607 0.61 -0.0 1,670,758 - Dshi_1607 0.63 +0.4 1,670,791 + Dshi_1607 0.66 +0.1 1,670,799 - Dshi_1607 0.66 -0.0 1,670,799 - Dshi_1607 0.66 -0.0 1,670,800 - Dshi_1607 0.66 +0.4 1,670,813 + Dshi_1607 0.67 +2.5 1,670,831 + Dshi_1607 0.69 +0.7 1,670,839 - Dshi_1607 0.69 +0.2 1,670,853 - Dshi_1607 0.71 -1.1 1,670,878 + Dshi_1607 0.73 +0.1 1,670,883 + Dshi_1607 0.73 -0.0 1,670,883 + Dshi_1607 0.73 +1.0 1,670,883 + Dshi_1607 0.73 +0.1 1,670,883 + Dshi_1607 0.73 +1.1 1,670,886 - Dshi_1607 0.73 +0.7 1,670,886 - Dshi_1607 0.73 +0.3 1,670,891 - Dshi_1607 0.74 +3.0 1,670,891 - Dshi_1607 0.74 -0.8 1,670,893 + Dshi_1607 0.74 +1.3 1,670,893 + Dshi_1607 0.74 +0.8 1,670,914 + Dshi_1607 0.75 +0.1
Or see this region's nucleotide sequence