Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1195

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1194 and Dshi_1195 are separated by 96 nucleotidesDshi_1195 and Dshi_1196 are separated by 472 nucleotides Dshi_1194: Dshi_1194 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data), at 1,231,911 to 1,234,142 _1194 Dshi_1195: Dshi_1195 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data), at 1,234,239 to 1,235,231 _1195 Dshi_1196: Dshi_1196 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,235,704 to 1,237,050 _1196 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1233.284 kb on + strand, within Dshi_1194at 1233.304 kb on + strand, within Dshi_1194at 1233.304 kb on + strand, within Dshi_1194at 1233.539 kb on - strand, within Dshi_1194at 1233.725 kb on - strand, within Dshi_1194at 1234.190 kb on - strandat 1234.442 kb on + strand, within Dshi_1195at 1234.769 kb on - strand, within Dshi_1195at 1235.004 kb on + strand, within Dshi_1195at 1235.288 kb on - strandat 1235.493 kb on + strandat 1235.501 kb on - strandat 1235.812 kb on + strandat 1235.820 kb on - strandat 1235.835 kb on - strandat 1235.905 kb on - strand, within Dshi_1196at 1235.925 kb on + strand, within Dshi_1196at 1236.013 kb on - strand, within Dshi_1196at 1236.094 kb on + strand, within Dshi_1196

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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1,233,284 + Dshi_1194 0.62 -1.4
1,233,304 + Dshi_1194 0.62 -1.4
1,233,304 + Dshi_1194 0.62 -0.1
1,233,539 - Dshi_1194 0.73 -2.4
1,233,725 - Dshi_1194 0.81 +0.2
1,234,190 - -0.9
1,234,442 + Dshi_1195 0.20 -0.2
1,234,769 - Dshi_1195 0.53 -0.9
1,235,004 + Dshi_1195 0.77 -3.3
1,235,288 - -0.7
1,235,493 + +0.2
1,235,501 - -0.8
1,235,812 + -0.2
1,235,820 - -0.8
1,235,835 - +1.3
1,235,905 - Dshi_1196 0.15 +3.2
1,235,925 + Dshi_1196 0.16 -1.0
1,236,013 - Dshi_1196 0.23 -2.0
1,236,094 + Dshi_1196 0.29 +2.2

Or see this region's nucleotide sequence