Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1098 and Dshi_1099 are separated by 54 nucleotides Dshi_1099 and Dshi_1100 are separated by 94 nucleotides
Dshi_1098: Dshi_1098 - major facilitator superfamily MFS_1 (RefSeq), at 1,126,077 to 1,127,306
_1098
Dshi_1099: Dshi_1099 - peptide methionine sulfoxide reductase (RefSeq), at 1,127,361 to 1,128,023
_1099
Dshi_1100: Dshi_1100 - ribosomal L11 methyltransferase (RefSeq), at 1,128,118 to 1,128,987
_1100
Position (kb)
1127
1128
1129 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1126.549 kb on + strand, within Dshi_1098 at 1126.559 kb on + strand, within Dshi_1098 at 1126.586 kb on + strand, within Dshi_1098 at 1126.603 kb on + strand, within Dshi_1098 at 1126.611 kb on - strand, within Dshi_1098 at 1126.617 kb on - strand, within Dshi_1098 at 1126.648 kb on - strand, within Dshi_1098 at 1126.672 kb on + strand, within Dshi_1098 at 1126.827 kb on + strand, within Dshi_1098 at 1126.926 kb on - strand, within Dshi_1098 at 1126.984 kb on - strand, within Dshi_1098 at 1126.986 kb on - strand, within Dshi_1098 at 1127.154 kb on + strand, within Dshi_1098 at 1127.337 kb on - strand at 1127.339 kb on + strand at 1127.617 kb on + strand, within Dshi_1099 at 1127.634 kb on + strand, within Dshi_1099 at 1127.777 kb on - strand, within Dshi_1099 at 1127.810 kb on - strand, within Dshi_1099 at 1127.817 kb on + strand, within Dshi_1099 at 1127.827 kb on + strand, within Dshi_1099 at 1128.006 kb on - strand at 1128.212 kb on + strand, within Dshi_1100 at 1128.239 kb on + strand, within Dshi_1100 at 1128.239 kb on + strand, within Dshi_1100 at 1128.253 kb on - strand, within Dshi_1100 at 1128.348 kb on + strand, within Dshi_1100 at 1128.492 kb on - strand, within Dshi_1100 at 1128.511 kb on + strand, within Dshi_1100 at 1128.521 kb on + strand, within Dshi_1100 at 1128.656 kb on + strand, within Dshi_1100 at 1128.689 kb on - strand, within Dshi_1100 at 1128.749 kb on - strand, within Dshi_1100 at 1128.828 kb on + strand, within Dshi_1100 at 1128.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 1,126,549 + Dshi_1098 0.38 +0.5 1,126,559 + Dshi_1098 0.39 -0.5 1,126,586 + Dshi_1098 0.41 +3.5 1,126,603 + Dshi_1098 0.43 -0.9 1,126,611 - Dshi_1098 0.43 +2.8 1,126,617 - Dshi_1098 0.44 -0.9 1,126,648 - Dshi_1098 0.46 -0.0 1,126,672 + Dshi_1098 0.48 -0.2 1,126,827 + Dshi_1098 0.61 -0.9 1,126,926 - Dshi_1098 0.69 +0.1 1,126,984 - Dshi_1098 0.74 +2.6 1,126,986 - Dshi_1098 0.74 +0.1 1,127,154 + Dshi_1098 0.88 +0.3 1,127,337 - +0.7 1,127,339 + -0.5 1,127,617 + Dshi_1099 0.39 +1.4 1,127,634 + Dshi_1099 0.41 +1.0 1,127,777 - Dshi_1099 0.63 +1.6 1,127,810 - Dshi_1099 0.68 +0.3 1,127,817 + Dshi_1099 0.69 -0.3 1,127,827 + Dshi_1099 0.70 +0.7 1,128,006 - +0.1 1,128,212 + Dshi_1100 0.11 -0.5 1,128,239 + Dshi_1100 0.14 -0.4 1,128,239 + Dshi_1100 0.14 +0.0 1,128,253 - Dshi_1100 0.16 -0.5 1,128,348 + Dshi_1100 0.26 -0.6 1,128,492 - Dshi_1100 0.43 -0.2 1,128,511 + Dshi_1100 0.45 +0.4 1,128,521 + Dshi_1100 0.46 -0.8 1,128,656 + Dshi_1100 0.62 +0.6 1,128,689 - Dshi_1100 0.66 -0.2 1,128,749 - Dshi_1100 0.73 +0.8 1,128,828 + Dshi_1100 0.82 -0.2 1,128,935 - -0.4
Or see this region's nucleotide sequence