Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1099

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1098 and Dshi_1099 are separated by 54 nucleotidesDshi_1099 and Dshi_1100 are separated by 94 nucleotides Dshi_1098: Dshi_1098 - major facilitator superfamily MFS_1 (RefSeq), at 1,126,077 to 1,127,306 _1098 Dshi_1099: Dshi_1099 - peptide methionine sulfoxide reductase (RefSeq), at 1,127,361 to 1,128,023 _1099 Dshi_1100: Dshi_1100 - ribosomal L11 methyltransferase (RefSeq), at 1,128,118 to 1,128,987 _1100 Position (kb) 1127 1128 1129Strain fitness (log2 ratio) -1 0 1 2 3at 1126.549 kb on + strand, within Dshi_1098at 1126.559 kb on + strand, within Dshi_1098at 1126.586 kb on + strand, within Dshi_1098at 1126.603 kb on + strand, within Dshi_1098at 1126.611 kb on - strand, within Dshi_1098at 1126.617 kb on - strand, within Dshi_1098at 1126.648 kb on - strand, within Dshi_1098at 1126.672 kb on + strand, within Dshi_1098at 1126.827 kb on + strand, within Dshi_1098at 1126.926 kb on - strand, within Dshi_1098at 1126.984 kb on - strand, within Dshi_1098at 1126.986 kb on - strand, within Dshi_1098at 1127.154 kb on + strand, within Dshi_1098at 1127.337 kb on - strandat 1127.339 kb on + strandat 1127.617 kb on + strand, within Dshi_1099at 1127.634 kb on + strand, within Dshi_1099at 1127.777 kb on - strand, within Dshi_1099at 1127.810 kb on - strand, within Dshi_1099at 1127.817 kb on + strand, within Dshi_1099at 1127.827 kb on + strand, within Dshi_1099at 1128.006 kb on - strandat 1128.212 kb on + strand, within Dshi_1100at 1128.239 kb on + strand, within Dshi_1100at 1128.239 kb on + strand, within Dshi_1100at 1128.253 kb on - strand, within Dshi_1100at 1128.348 kb on + strand, within Dshi_1100at 1128.492 kb on - strand, within Dshi_1100at 1128.511 kb on + strand, within Dshi_1100at 1128.521 kb on + strand, within Dshi_1100at 1128.656 kb on + strand, within Dshi_1100at 1128.689 kb on - strand, within Dshi_1100at 1128.749 kb on - strand, within Dshi_1100at 1128.828 kb on + strand, within Dshi_1100at 1128.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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1,126,549 + Dshi_1098 0.38 +0.5
1,126,559 + Dshi_1098 0.39 -0.5
1,126,586 + Dshi_1098 0.41 +3.5
1,126,603 + Dshi_1098 0.43 -0.9
1,126,611 - Dshi_1098 0.43 +2.8
1,126,617 - Dshi_1098 0.44 -0.9
1,126,648 - Dshi_1098 0.46 -0.0
1,126,672 + Dshi_1098 0.48 -0.2
1,126,827 + Dshi_1098 0.61 -0.9
1,126,926 - Dshi_1098 0.69 +0.1
1,126,984 - Dshi_1098 0.74 +2.6
1,126,986 - Dshi_1098 0.74 +0.1
1,127,154 + Dshi_1098 0.88 +0.3
1,127,337 - +0.7
1,127,339 + -0.5
1,127,617 + Dshi_1099 0.39 +1.4
1,127,634 + Dshi_1099 0.41 +1.0
1,127,777 - Dshi_1099 0.63 +1.6
1,127,810 - Dshi_1099 0.68 +0.3
1,127,817 + Dshi_1099 0.69 -0.3
1,127,827 + Dshi_1099 0.70 +0.7
1,128,006 - +0.1
1,128,212 + Dshi_1100 0.11 -0.5
1,128,239 + Dshi_1100 0.14 -0.4
1,128,239 + Dshi_1100 0.14 +0.0
1,128,253 - Dshi_1100 0.16 -0.5
1,128,348 + Dshi_1100 0.26 -0.6
1,128,492 - Dshi_1100 0.43 -0.2
1,128,511 + Dshi_1100 0.45 +0.4
1,128,521 + Dshi_1100 0.46 -0.8
1,128,656 + Dshi_1100 0.62 +0.6
1,128,689 - Dshi_1100 0.66 -0.2
1,128,749 - Dshi_1100 0.73 +0.8
1,128,828 + Dshi_1100 0.82 -0.2
1,128,935 - -0.4

Or see this region's nucleotide sequence