Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1048 and Dshi_1049 overlap by 4 nucleotides Dshi_1049 and Dshi_1050 are separated by 7 nucleotides Dshi_1050 and Dshi_1051 overlap by 11 nucleotides
Dshi_1048: Dshi_1048 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,081,882 to 1,082,679
_1048
Dshi_1049: Dshi_1049 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,082,676 to 1,083,461
_1049
Dshi_1050: Dshi_1050 - hypothetical protein (RefSeq), at 1,083,469 to 1,083,843
_1050
Dshi_1051: Dshi_1051 - MmgE/PrpD family protein (RefSeq), at 1,083,833 to 1,085,182
_1051
Position (kb)
1083
1084 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1082.608 kb on + strand at 1082.672 kb on + strand at 1082.769 kb on - strand, within Dshi_1049 at 1082.836 kb on - strand, within Dshi_1049 at 1082.860 kb on + strand, within Dshi_1049 at 1082.872 kb on + strand, within Dshi_1049 at 1082.874 kb on - strand, within Dshi_1049 at 1082.931 kb on - strand, within Dshi_1049 at 1082.936 kb on + strand, within Dshi_1049 at 1083.009 kb on + strand, within Dshi_1049 at 1083.062 kb on + strand, within Dshi_1049 at 1083.118 kb on - strand, within Dshi_1049 at 1083.357 kb on + strand, within Dshi_1049 at 1083.466 kb on - strand at 1083.475 kb on - strand at 1083.486 kb on - strand at 1083.646 kb on + strand, within Dshi_1050 at 1083.730 kb on - strand, within Dshi_1050 at 1083.756 kb on - strand, within Dshi_1050 at 1083.760 kb on + strand, within Dshi_1050 at 1083.767 kb on - strand, within Dshi_1050 at 1083.768 kb on - strand, within Dshi_1050 at 1083.773 kb on + strand, within Dshi_1050 at 1083.783 kb on + strand, within Dshi_1050 at 1083.839 kb on - strand at 1084.029 kb on - strand, within Dshi_1051 at 1084.224 kb on + strand, within Dshi_1051 at 1084.224 kb on + strand, within Dshi_1051 at 1084.232 kb on - strand, within Dshi_1051 at 1084.370 kb on + strand, within Dshi_1051 at 1084.438 kb on - strand, within Dshi_1051 at 1084.452 kb on + strand, within Dshi_1051 at 1084.452 kb on + strand, within Dshi_1051 at 1084.460 kb on - strand, within Dshi_1051 at 1084.487 kb on + strand, within Dshi_1051 at 1084.553 kb on - strand, within Dshi_1051 at 1084.553 kb on - strand, within Dshi_1051 at 1084.807 kb on + strand, within Dshi_1051
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 1,082,608 + -1.2 1,082,672 + -3.2 1,082,769 - Dshi_1049 0.12 -3.0 1,082,836 - Dshi_1049 0.20 +0.2 1,082,860 + Dshi_1049 0.23 +0.2 1,082,872 + Dshi_1049 0.25 -3.0 1,082,874 - Dshi_1049 0.25 +1.2 1,082,931 - Dshi_1049 0.32 -1.8 1,082,936 + Dshi_1049 0.33 +0.2 1,083,009 + Dshi_1049 0.42 -0.0 1,083,062 + Dshi_1049 0.49 -1.2 1,083,118 - Dshi_1049 0.56 -2.4 1,083,357 + Dshi_1049 0.87 -0.8 1,083,466 - +0.2 1,083,475 - -0.8 1,083,486 - -1.4 1,083,646 + Dshi_1050 0.47 -3.2 1,083,730 - Dshi_1050 0.70 -1.2 1,083,756 - Dshi_1050 0.77 +0.2 1,083,760 + Dshi_1050 0.78 -1.9 1,083,767 - Dshi_1050 0.79 +0.2 1,083,768 - Dshi_1050 0.80 +0.2 1,083,773 + Dshi_1050 0.81 -1.3 1,083,783 + Dshi_1050 0.84 -0.8 1,083,839 - -0.2 1,084,029 - Dshi_1051 0.15 -0.8 1,084,224 + Dshi_1051 0.29 +0.2 1,084,224 + Dshi_1051 0.29 -0.8 1,084,232 - Dshi_1051 0.30 -0.8 1,084,370 + Dshi_1051 0.40 -1.4 1,084,438 - Dshi_1051 0.45 -2.6 1,084,452 + Dshi_1051 0.46 +0.2 1,084,452 + Dshi_1051 0.46 +0.2 1,084,460 - Dshi_1051 0.46 -0.4 1,084,487 + Dshi_1051 0.48 -3.0 1,084,553 - Dshi_1051 0.53 -0.1 1,084,553 - Dshi_1051 0.53 -3.2 1,084,807 + Dshi_1051 0.72 -0.1
Or see this region's nucleotide sequence