Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0995 and Dshi_0996 are separated by 100 nucleotides Dshi_0996 and Dshi_0997 are separated by 29 nucleotides
Dshi_0995: Dshi_0995 - transcriptional regulator, LysR family (RefSeq), at 1,025,066 to 1,025,971
_0995
Dshi_0996: Dshi_0996 - NADH/Ubiquinone/plastoquinone (complex I) (RefSeq), at 1,026,072 to 1,027,577
_0996
Dshi_0997: Dshi_0997 - hypothetical protein (RefSeq), at 1,027,607 to 1,029,982
_0997
Position (kb)
1026
1027
1028 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1025.091 kb on + strand at 1025.263 kb on - strand, within Dshi_0995 at 1025.335 kb on - strand, within Dshi_0995 at 1025.335 kb on - strand, within Dshi_0995 at 1025.335 kb on - strand, within Dshi_0995 at 1025.418 kb on + strand, within Dshi_0995 at 1025.459 kb on - strand, within Dshi_0995 at 1025.629 kb on - strand, within Dshi_0995 at 1025.770 kb on + strand, within Dshi_0995 at 1025.818 kb on - strand, within Dshi_0995 at 1025.824 kb on + strand, within Dshi_0995 at 1025.855 kb on + strand, within Dshi_0995 at 1025.947 kb on + strand at 1026.080 kb on + strand at 1026.150 kb on - strand at 1026.393 kb on + strand, within Dshi_0996 at 1026.393 kb on + strand, within Dshi_0996 at 1026.436 kb on - strand, within Dshi_0996 at 1026.460 kb on + strand, within Dshi_0996 at 1026.576 kb on - strand, within Dshi_0996 at 1026.723 kb on - strand, within Dshi_0996 at 1026.733 kb on + strand, within Dshi_0996 at 1026.744 kb on + strand, within Dshi_0996 at 1026.884 kb on - strand, within Dshi_0996 at 1026.884 kb on - strand, within Dshi_0996 at 1026.979 kb on - strand, within Dshi_0996 at 1027.025 kb on + strand, within Dshi_0996 at 1027.059 kb on + strand, within Dshi_0996 at 1027.159 kb on + strand, within Dshi_0996 at 1027.241 kb on - strand, within Dshi_0996 at 1027.311 kb on + strand, within Dshi_0996 at 1027.455 kb on + strand at 1027.463 kb on - strand at 1027.494 kb on - strand at 1027.877 kb on + strand, within Dshi_0997 at 1027.890 kb on - strand, within Dshi_0997 at 1027.999 kb on + strand, within Dshi_0997 at 1028.109 kb on + strand, within Dshi_0997 at 1028.129 kb on - strand, within Dshi_0997 at 1028.145 kb on - strand, within Dshi_0997 at 1028.155 kb on - strand, within Dshi_0997 at 1028.413 kb on + strand, within Dshi_0997 at 1028.460 kb on + strand, within Dshi_0997 at 1028.463 kb on - strand, within Dshi_0997 at 1028.473 kb on - strand, within Dshi_0997 at 1028.530 kb on - strand, within Dshi_0997 at 1028.542 kb on + strand, within Dshi_0997 at 1028.559 kb on + strand, within Dshi_0997 at 1028.562 kb on - strand, within Dshi_0997
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 1,025,091 + -0.6 1,025,263 - Dshi_0995 0.22 -0.1 1,025,335 - Dshi_0995 0.30 -1.8 1,025,335 - Dshi_0995 0.30 -1.4 1,025,335 - Dshi_0995 0.30 -2.1 1,025,418 + Dshi_0995 0.39 +1.8 1,025,459 - Dshi_0995 0.43 +0.2 1,025,629 - Dshi_0995 0.62 -0.8 1,025,770 + Dshi_0995 0.78 -0.8 1,025,818 - Dshi_0995 0.83 -2.0 1,025,824 + Dshi_0995 0.84 +0.2 1,025,855 + Dshi_0995 0.87 +1.2 1,025,947 + +0.2 1,026,080 + +0.2 1,026,150 - +1.2 1,026,393 + Dshi_0996 0.21 -0.5 1,026,393 + Dshi_0996 0.21 -0.9 1,026,436 - Dshi_0996 0.24 +0.2 1,026,460 + Dshi_0996 0.26 +0.2 1,026,576 - Dshi_0996 0.33 +0.2 1,026,723 - Dshi_0996 0.43 +0.2 1,026,733 + Dshi_0996 0.44 -0.3 1,026,744 + Dshi_0996 0.45 -3.5 1,026,884 - Dshi_0996 0.54 -3.5 1,026,884 - Dshi_0996 0.54 -1.4 1,026,979 - Dshi_0996 0.60 -1.4 1,027,025 + Dshi_0996 0.63 -0.8 1,027,059 + Dshi_0996 0.66 +1.2 1,027,159 + Dshi_0996 0.72 +1.8 1,027,241 - Dshi_0996 0.78 -0.2 1,027,311 + Dshi_0996 0.82 +0.2 1,027,455 + +0.2 1,027,463 - +0.2 1,027,494 - +2.2 1,027,877 + Dshi_0997 0.11 +0.2 1,027,890 - Dshi_0997 0.12 +0.2 1,027,999 + Dshi_0997 0.16 -1.4 1,028,109 + Dshi_0997 0.21 +0.8 1,028,129 - Dshi_0997 0.22 +0.2 1,028,145 - Dshi_0997 0.23 +0.2 1,028,155 - Dshi_0997 0.23 -2.1 1,028,413 + Dshi_0997 0.34 +1.8 1,028,460 + Dshi_0997 0.36 -2.4 1,028,463 - Dshi_0997 0.36 -2.1 1,028,473 - Dshi_0997 0.36 +1.8 1,028,530 - Dshi_0997 0.39 +1.2 1,028,542 + Dshi_0997 0.39 -1.4 1,028,559 + Dshi_0997 0.40 -2.6 1,028,562 - Dshi_0997 0.40 -0.5
Or see this region's nucleotide sequence