Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0893 and Dshi_0894 are separated by 216 nucleotides Dshi_0894 and Dshi_0895 are separated by 389 nucleotides
Dshi_0893: Dshi_0893 - Peptidoglycan-binding domain 1 protein (RefSeq), at 909,083 to 910,375
_0893
Dshi_0894: Dshi_0894 - Peptidoglycan-binding domain 1 protein (RefSeq), at 910,592 to 911,965
_0894
Dshi_0895: Dshi_0895 - peptidase S1 and S6 chymotrypsin/Hap (RefSeq), at 912,355 to 914,220
_0895
Position (kb) 910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 909.635 kb on + strand, within Dshi_0893 at 909.643 kb on - strand, within Dshi_0893 at 909.643 kb on - strand, within Dshi_0893 at 909.704 kb on - strand, within Dshi_0893 at 909.722 kb on + strand, within Dshi_0893 at 909.732 kb on + strand, within Dshi_0893 at 909.796 kb on + strand, within Dshi_0893 at 909.804 kb on - strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.835 kb on + strand, within Dshi_0893 at 909.838 kb on - strand, within Dshi_0893 at 909.838 kb on - strand, within Dshi_0893 at 909.838 kb on - strand, within Dshi_0893 at 909.855 kb on + strand, within Dshi_0893 at 909.913 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.958 kb on - strand, within Dshi_0893 at 909.960 kb on + strand, within Dshi_0893 at 909.969 kb on + strand, within Dshi_0893 at 910.032 kb on - strand, within Dshi_0893 at 910.034 kb on + strand, within Dshi_0893 at 910.042 kb on - strand, within Dshi_0893 at 910.072 kb on + strand, within Dshi_0893 at 910.080 kb on - strand, within Dshi_0893 at 910.146 kb on + strand, within Dshi_0893 at 910.147 kb on + strand, within Dshi_0893 at 910.152 kb on + strand, within Dshi_0893 at 910.160 kb on + strand, within Dshi_0893 at 910.319 kb on + strand at 910.319 kb on + strand at 910.327 kb on - strand at 910.350 kb on + strand at 910.358 kb on - strand at 910.358 kb on - strand at 910.360 kb on + strand at 910.368 kb on - strand at 910.368 kb on - strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.385 kb on + strand at 910.391 kb on + strand at 910.391 kb on + strand at 910.391 kb on + strand at 910.391 kb on + strand at 910.395 kb on + strand at 910.397 kb on + strand at 910.397 kb on + strand at 910.397 kb on + strand at 910.399 kb on - strand at 910.399 kb on - strand at 910.401 kb on - strand at 910.402 kb on + strand at 910.405 kb on - strand at 910.436 kb on + strand at 910.436 kb on + strand at 910.436 kb on + strand at 910.436 kb on + strand at 910.441 kb on + strand at 910.442 kb on - strand at 910.444 kb on - strand at 910.446 kb on + strand at 910.482 kb on - strand at 910.534 kb on + strand at 910.542 kb on - strand at 910.542 kb on - strand at 910.547 kb on + strand at 910.547 kb on + strand at 910.547 kb on + strand at 910.554 kb on + strand at 910.555 kb on - strand at 910.582 kb on + strand at 910.590 kb on - strand at 910.613 kb on + strand at 910.613 kb on + strand at 910.613 kb on + strand at 910.618 kb on + strand at 910.618 kb on + strand at 910.618 kb on + strand at 910.620 kb on + strand at 910.626 kb on + strand at 910.626 kb on + strand at 910.626 kb on + strand at 910.626 kb on + strand at 910.626 kb on - strand at 910.626 kb on - strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.636 kb on + strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.637 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.644 kb on - strand at 910.644 kb on - strand at 910.645 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.659 kb on - strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.669 kb on - strand at 910.669 kb on - strand at 910.669 kb on - strand at 910.684 kb on + strand at 910.685 kb on + strand at 910.685 kb on + strand at 910.705 kb on - strand at 910.708 kb on - strand at 910.713 kb on + strand at 910.724 kb on + strand at 910.737 kb on - strand, within Dshi_0894 at 910.739 kb on + strand, within Dshi_0894 at 910.747 kb on - strand, within Dshi_0894 at 910.747 kb on - strand, within Dshi_0894 at 910.750 kb on + strand, within Dshi_0894 at 910.750 kb on + strand, within Dshi_0894 at 910.755 kb on + strand, within Dshi_0894 at 910.783 kb on + strand, within Dshi_0894 at 910.784 kb on + strand, within Dshi_0894 at 910.794 kb on + strand, within Dshi_0894 at 910.802 kb on + strand, within Dshi_0894 at 910.809 kb on + strand, within Dshi_0894 at 910.833 kb on + strand, within Dshi_0894 at 910.876 kb on + strand, within Dshi_0894 at 910.877 kb on + strand, within Dshi_0894 at 910.926 kb on - strand, within Dshi_0894 at 910.933 kb on - strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.947 kb on + strand, within Dshi_0894 at 910.955 kb on + strand, within Dshi_0894 at 910.975 kb on - strand, within Dshi_0894 at 910.977 kb on + strand, within Dshi_0894 at 911.002 kb on + strand, within Dshi_0894 at 911.002 kb on + strand, within Dshi_0894 at 911.010 kb on - strand, within Dshi_0894 at 911.014 kb on + strand, within Dshi_0894 at 911.030 kb on + strand, within Dshi_0894 at 911.030 kb on + strand, within Dshi_0894 at 911.042 kb on + strand, within Dshi_0894 at 911.057 kb on + strand, within Dshi_0894 at 911.067 kb on + strand, within Dshi_0894 at 911.106 kb on - strand, within Dshi_0894 at 911.129 kb on + strand, within Dshi_0894 at 911.137 kb on + strand, within Dshi_0894 at 911.158 kb on + strand, within Dshi_0894 at 911.158 kb on - strand, within Dshi_0894 at 911.166 kb on - strand, within Dshi_0894 at 911.166 kb on - strand, within Dshi_0894 at 911.166 kb on - strand, within Dshi_0894 at 911.179 kb on - strand, within Dshi_0894 at 911.264 kb on + strand, within Dshi_0894 at 911.280 kb on + strand, within Dshi_0894 at 911.281 kb on - strand, within Dshi_0894 at 911.291 kb on - strand, within Dshi_0894 at 911.348 kb on + strand, within Dshi_0894 at 911.424 kb on + strand, within Dshi_0894 at 911.425 kb on - strand, within Dshi_0894 at 911.425 kb on - strand, within Dshi_0894 at 911.430 kb on - strand, within Dshi_0894 at 911.435 kb on - strand, within Dshi_0894 at 911.594 kb on + strand, within Dshi_0894 at 911.611 kb on + strand, within Dshi_0894 at 911.648 kb on + strand, within Dshi_0894 at 911.669 kb on + strand, within Dshi_0894 at 911.677 kb on - strand, within Dshi_0894 at 911.695 kb on + strand, within Dshi_0894 at 911.698 kb on - strand, within Dshi_0894 at 911.708 kb on - strand, within Dshi_0894 at 911.708 kb on - strand, within Dshi_0894 at 911.732 kb on + strand, within Dshi_0894 at 911.773 kb on + strand, within Dshi_0894 at 911.795 kb on + strand, within Dshi_0894 at 911.801 kb on - strand, within Dshi_0894 at 911.860 kb on + strand at 912.024 kb on - strand at 912.150 kb on - strand at 912.211 kb on + strand at 912.219 kb on - strand at 912.219 kb on - strand at 912.255 kb on - strand at 912.289 kb on - strand at 912.290 kb on - strand at 912.334 kb on - strand at 912.354 kb on - strand at 912.476 kb on - strand at 912.662 kb on - strand, within Dshi_0895 at 912.782 kb on - strand, within Dshi_0895 at 912.816 kb on + strand, within Dshi_0895 at 912.824 kb on - strand, within Dshi_0895 at 912.826 kb on - strand, within Dshi_0895 at 912.826 kb on - strand, within Dshi_0895
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 909,635 + Dshi_0893 0.43 +0.6 909,643 - Dshi_0893 0.43 +0.9 909,643 - Dshi_0893 0.43 +3.3 909,704 - Dshi_0893 0.48 +0.8 909,722 + Dshi_0893 0.49 +0.0 909,732 + Dshi_0893 0.50 +0.9 909,796 + Dshi_0893 0.55 +1.9 909,804 - Dshi_0893 0.56 -1.1 909,830 + Dshi_0893 0.58 -1.3 909,830 + Dshi_0893 0.58 +0.6 909,830 + Dshi_0893 0.58 -0.6 909,830 + Dshi_0893 0.58 -0.9 909,830 + Dshi_0893 0.58 +1.0 909,835 + Dshi_0893 0.58 +0.3 909,838 - Dshi_0893 0.58 +2.9 909,838 - Dshi_0893 0.58 -0.7 909,838 - Dshi_0893 0.58 -0.9 909,855 + Dshi_0893 0.60 +0.8 909,913 + Dshi_0893 0.64 +2.3 909,950 + Dshi_0893 0.67 +3.3 909,950 + Dshi_0893 0.67 -1.1 909,950 + Dshi_0893 0.67 +0.1 909,950 + Dshi_0893 0.67 +0.5 909,958 - Dshi_0893 0.68 +0.3 909,960 + Dshi_0893 0.68 -0.2 909,969 + Dshi_0893 0.69 +1.9 910,032 - Dshi_0893 0.73 +1.3 910,034 + Dshi_0893 0.74 -0.1 910,042 - Dshi_0893 0.74 -0.3 910,072 + Dshi_0893 0.76 +1.4 910,080 - Dshi_0893 0.77 +0.3 910,146 + Dshi_0893 0.82 -1.7 910,147 + Dshi_0893 0.82 -0.8 910,152 + Dshi_0893 0.83 +0.7 910,160 + Dshi_0893 0.83 -1.6 910,319 + -1.1 910,319 + +0.6 910,327 - +2.6 910,350 + +0.6 910,358 - +0.9 910,358 - -3.0 910,360 + -2.4 910,368 - +0.9 910,368 - -1.7 910,370 + -0.3 910,370 + -0.7 910,370 + +0.3 910,370 + +0.0 910,370 + -1.0 910,378 - +0.0 910,378 - -1.3 910,378 - -1.3 910,378 - -1.7 910,378 - -1.3 910,385 + -1.1 910,391 + +2.9 910,391 + +2.1 910,391 + -0.3 910,391 + -0.8 910,395 + +1.3 910,397 + +0.0 910,397 + +0.6 910,397 + -0.7 910,399 - +0.3 910,399 - +0.0 910,401 - -0.7 910,402 + +0.3 910,405 - -1.2 910,436 + -3.3 910,436 + -2.3 910,436 + +0.1 910,436 + -0.8 910,441 + -0.3 910,442 - -0.7 910,444 - +1.9 910,446 + -0.7 910,482 - +1.9 910,534 + -0.9 910,542 - +1.3 910,542 - -0.2 910,547 + +0.1 910,547 + -0.7 910,547 + -1.2 910,554 + +1.3 910,555 - +0.3 910,582 + -0.7 910,590 - +2.3 910,613 + -0.3 910,613 + +0.5 910,613 + -0.1 910,618 + -3.1 910,618 + -1.3 910,618 + -0.1 910,620 + -2.1 910,626 + +0.8 910,626 + -1.1 910,626 + -2.1 910,626 + -2.1 910,626 - -0.3 910,626 - -0.0 910,628 + +1.3 910,628 + -2.4 910,628 + -1.7 910,628 + -2.3 910,628 + +1.1 910,628 + -0.7 910,628 + -0.6 910,628 + +1.0 910,636 + -1.6 910,636 - -0.1 910,636 - +0.6 910,636 - -1.1 910,636 - +2.4 910,636 - -0.3 910,636 - +1.8 910,637 + -1.2 910,638 + +0.8 910,638 + +1.3 910,638 + -0.7 910,638 + -0.6 910,638 + -1.7 910,638 + +0.3 910,638 + -2.1 910,638 + -1.9 910,638 + +0.2 910,638 + -2.0 910,638 + -1.0 910,638 + +1.8 910,638 + +0.8 910,638 + -1.5 910,638 + -1.6 910,638 + -0.6 910,638 + -1.2 910,638 + -2.7 910,644 - +2.3 910,644 - -0.1 910,645 - +2.3 910,646 - -2.1 910,646 - +0.8 910,646 - -0.2 910,646 - +2.6 910,646 - -2.7 910,646 - +1.3 910,651 + -0.2 910,651 + +1.3 910,651 + +1.8 910,651 + +1.8 910,651 + +0.3 910,651 + -1.0 910,659 - -0.9 910,661 + -0.7 910,661 + +1.1 910,661 + -0.5 910,661 + -0.2 910,661 + -1.0 910,661 + -1.7 910,661 + +0.3 910,669 - -0.4 910,669 - -0.9 910,669 - +0.1 910,684 + -0.3 910,685 + +0.3 910,685 + +0.3 910,705 - -1.7 910,708 - +1.8 910,713 + -0.9 910,724 + +1.3 910,737 - Dshi_0894 0.11 +3.4 910,739 + Dshi_0894 0.11 -1.5 910,747 - Dshi_0894 0.11 -0.2 910,747 - Dshi_0894 0.11 -1.6 910,750 + Dshi_0894 0.11 +0.0 910,750 + Dshi_0894 0.11 -1.3 910,755 + Dshi_0894 0.12 -1.0 910,783 + Dshi_0894 0.14 -1.3 910,784 + Dshi_0894 0.14 -0.7 910,794 + Dshi_0894 0.15 +0.6 910,802 + Dshi_0894 0.15 +0.3 910,809 + Dshi_0894 0.16 -1.1 910,833 + Dshi_0894 0.18 -0.2 910,876 + Dshi_0894 0.21 -2.6 910,877 + Dshi_0894 0.21 +1.3 910,926 - Dshi_0894 0.24 +0.3 910,933 - Dshi_0894 0.25 +3.1 910,941 + Dshi_0894 0.25 -1.0 910,941 + Dshi_0894 0.25 +0.5 910,941 + Dshi_0894 0.25 +0.8 910,941 + Dshi_0894 0.25 -0.0 910,947 + Dshi_0894 0.26 -1.1 910,955 + Dshi_0894 0.26 -1.6 910,975 - Dshi_0894 0.28 -0.2 910,977 + Dshi_0894 0.28 -0.3 911,002 + Dshi_0894 0.30 -1.2 911,002 + Dshi_0894 0.30 +0.8 911,010 - Dshi_0894 0.30 -0.4 911,014 + Dshi_0894 0.31 -0.7 911,030 + Dshi_0894 0.32 +0.3 911,030 + Dshi_0894 0.32 +2.4 911,042 + Dshi_0894 0.33 -0.9 911,057 + Dshi_0894 0.34 -1.5 911,067 + Dshi_0894 0.35 -1.8 911,106 - Dshi_0894 0.37 -1.2 911,129 + Dshi_0894 0.39 -0.4 911,137 + Dshi_0894 0.40 -0.1 911,158 + Dshi_0894 0.41 -1.8 911,158 - Dshi_0894 0.41 +2.3 911,166 - Dshi_0894 0.42 +0.4 911,166 - Dshi_0894 0.42 +1.3 911,166 - Dshi_0894 0.42 -0.3 911,179 - Dshi_0894 0.43 +0.5 911,264 + Dshi_0894 0.49 -0.6 911,280 + Dshi_0894 0.50 +1.3 911,281 - Dshi_0894 0.50 +0.4 911,291 - Dshi_0894 0.51 +1.0 911,348 + Dshi_0894 0.55 -1.9 911,424 + Dshi_0894 0.61 +1.8 911,425 - Dshi_0894 0.61 -0.0 911,425 - Dshi_0894 0.61 +1.8 911,430 - Dshi_0894 0.61 -0.7 911,435 - Dshi_0894 0.61 +1.8 911,594 + Dshi_0894 0.73 +0.7 911,611 + Dshi_0894 0.74 -0.7 911,648 + Dshi_0894 0.77 -0.2 911,669 + Dshi_0894 0.78 +0.8 911,677 - Dshi_0894 0.79 -0.3 911,695 + Dshi_0894 0.80 -1.1 911,698 - Dshi_0894 0.80 -0.7 911,708 - Dshi_0894 0.81 -0.9 911,708 - Dshi_0894 0.81 +2.1 911,732 + Dshi_0894 0.83 +0.5 911,773 + Dshi_0894 0.86 -1.3 911,795 + Dshi_0894 0.88 +0.3 911,801 - Dshi_0894 0.88 -0.4 911,860 + -0.2 912,024 - -2.0 912,150 - +1.8 912,211 + +0.5 912,219 - -2.3 912,219 - -1.7 912,255 - +1.3 912,289 - -1.8 912,290 - +1.2 912,334 - +0.2 912,354 - +1.2 912,476 - +0.2 912,662 - Dshi_0895 0.16 +1.2 912,782 - Dshi_0895 0.23 +1.2 912,816 + Dshi_0895 0.25 +2.8 912,824 - Dshi_0895 0.25 +1.8 912,826 - Dshi_0895 0.25 +1.2 912,826 - Dshi_0895 0.25 +0.2
Or see this region's nucleotide sequence