Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0862 and Dshi_0863 are separated by 32 nucleotides Dshi_0863 and Dshi_0864 are separated by 214 nucleotides Dshi_0864 and Dshi_0865 are separated by 1 nucleotides
Dshi_0862: Dshi_0862 - Extracellular ligand-binding receptor (RefSeq), at 877,656 to 878,795
_0862
Dshi_0863: Dshi_0863 - transcriptional regulator, AsnC family (RefSeq), at 878,828 to 879,064
_0863
Dshi_0864: Dshi_0864 - (2Fe-2S)-binding domain protein (RefSeq), at 879,279 to 879,737
_0864
Dshi_0865: Dshi_0865 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 879,739 to 881,922
_0865
Position (kb) 879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 878.294 kb on + strand, within Dshi_0862 at 878.317 kb on + strand, within Dshi_0862 at 878.372 kb on + strand, within Dshi_0862 at 878.401 kb on - strand, within Dshi_0862 at 878.464 kb on - strand, within Dshi_0862 at 878.482 kb on + strand, within Dshi_0862 at 878.553 kb on - strand, within Dshi_0862 at 878.621 kb on - strand at 878.681 kb on - strand, within Dshi_0862 at 878.726 kb on + strand at 878.734 kb on - strand at 878.738 kb on - strand at 878.739 kb on - strand at 878.779 kb on - strand at 878.826 kb on + strand at 878.842 kb on + strand at 878.850 kb on - strand at 878.906 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.995 kb on + strand, within Dshi_0863 at 879.003 kb on - strand, within Dshi_0863 at 879.049 kb on - strand at 879.059 kb on + strand at 879.067 kb on - strand at 879.067 kb on - strand at 879.081 kb on - strand at 879.112 kb on + strand at 879.192 kb on - strand at 879.221 kb on - strand at 879.231 kb on - strand at 879.245 kb on - strand at 879.294 kb on - strand at 879.369 kb on - strand, within Dshi_0864 at 879.502 kb on - strand, within Dshi_0864 at 879.528 kb on + strand, within Dshi_0864 at 879.571 kb on + strand, within Dshi_0864 at 879.678 kb on - strand, within Dshi_0864 at 879.752 kb on - strand at 879.758 kb on - strand at 879.856 kb on + strand at 879.864 kb on - strand at 879.878 kb on + strand at 879.886 kb on - strand at 879.900 kb on + strand at 879.949 kb on + strand at 879.972 kb on + strand, within Dshi_0865 at 880.012 kb on - strand, within Dshi_0865 at 880.047 kb on + strand, within Dshi_0865 at 880.055 kb on - strand, within Dshi_0865 at 880.085 kb on - strand, within Dshi_0865 at 880.097 kb on - strand, within Dshi_0865 at 880.202 kb on - strand, within Dshi_0865 at 880.221 kb on + strand, within Dshi_0865 at 880.265 kb on - strand, within Dshi_0865 at 880.404 kb on + strand, within Dshi_0865 at 880.404 kb on + strand, within Dshi_0865 at 880.462 kb on + strand, within Dshi_0865 at 880.488 kb on + strand, within Dshi_0865 at 880.630 kb on - strand, within Dshi_0865
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 878,294 + Dshi_0862 0.56 -0.1 878,317 + Dshi_0862 0.58 -1.7 878,372 + Dshi_0862 0.63 +0.3 878,401 - Dshi_0862 0.65 -3.2 878,464 - Dshi_0862 0.71 -1.3 878,482 + Dshi_0862 0.72 +0.3 878,553 - Dshi_0862 0.79 +1.9 878,621 - +0.3 878,681 - Dshi_0862 0.90 -2.7 878,726 + +0.6 878,734 - -0.7 878,738 - -1.0 878,739 - -2.0 878,779 - -1.1 878,826 + -0.3 878,842 + +1.0 878,850 - -1.3 878,906 + Dshi_0863 0.33 +1.3 878,911 + Dshi_0863 0.35 +0.3 878,911 + Dshi_0863 0.35 +3.1 878,995 + Dshi_0863 0.70 -3.4 879,003 - Dshi_0863 0.74 +0.3 879,049 - -1.6 879,059 + -1.7 879,067 - -1.7 879,067 - -1.7 879,081 - +0.3 879,112 + -1.9 879,192 - -0.2 879,221 - -1.7 879,231 - -3.3 879,245 - -1.7 879,294 - +0.3 879,369 - Dshi_0864 0.20 -1.3 879,502 - Dshi_0864 0.49 -2.9 879,528 + Dshi_0864 0.54 -0.2 879,571 + Dshi_0864 0.64 -0.3 879,678 - Dshi_0864 0.87 +0.0 879,752 - -1.0 879,758 - -1.8 879,856 + +0.3 879,864 - -1.6 879,878 + +2.3 879,886 - -0.7 879,900 + -0.9 879,949 + -1.6 879,972 + Dshi_0865 0.11 +0.3 880,012 - Dshi_0865 0.12 +0.3 880,047 + Dshi_0865 0.14 +1.3 880,055 - Dshi_0865 0.14 -0.7 880,085 - Dshi_0865 0.16 +1.3 880,097 - Dshi_0865 0.16 +1.3 880,202 - Dshi_0865 0.21 -0.9 880,221 + Dshi_0865 0.22 +1.3 880,265 - Dshi_0865 0.24 +0.3 880,404 + Dshi_0865 0.30 -2.1 880,404 + Dshi_0865 0.30 -1.3 880,462 + Dshi_0865 0.33 +0.3 880,488 + Dshi_0865 0.34 +1.5 880,630 - Dshi_0865 0.41 -2.7
Or see this region's nucleotide sequence