Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0780 and Dshi_0781 are separated by 4 nucleotides Dshi_0781 and Dshi_0782 are separated by 73 nucleotides Dshi_0782 and Dshi_0783 are separated by 46 nucleotides
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929
_0781
Dshi_0782: Dshi_0782 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 787,003 to 787,569
_0782
Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579
_0783
Position (kb) 787
788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780 at 786.523 kb on - strand, within Dshi_0780 at 786.600 kb on + strand at 786.621 kb on + strand at 787.008 kb on + strand at 787.018 kb on + strand at 787.026 kb on + strand at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.175 kb on - strand, within Dshi_0782 at 787.256 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.333 kb on + strand, within Dshi_0782 at 787.366 kb on - strand, within Dshi_0782 at 787.385 kb on + strand, within Dshi_0782 at 787.405 kb on - strand, within Dshi_0782 at 787.463 kb on - strand, within Dshi_0782 at 787.563 kb on + strand at 787.576 kb on - strand at 787.604 kb on + strand at 787.606 kb on + strand at 787.664 kb on + strand at 787.672 kb on + strand at 787.733 kb on - strand at 787.801 kb on - strand at 787.801 kb on - strand at 787.850 kb on + strand at 787.903 kb on - strand at 787.934 kb on + strand, within Dshi_0783 at 787.941 kb on - strand, within Dshi_0783 at 787.951 kb on + strand, within Dshi_0783 at 788.031 kb on - strand, within Dshi_0783 at 788.076 kb on - strand, within Dshi_0783 at 788.076 kb on - strand, within Dshi_0783 at 788.078 kb on - strand, within Dshi_0783 at 788.102 kb on + strand, within Dshi_0783 at 788.230 kb on + strand, within Dshi_0783 at 788.280 kb on + strand, within Dshi_0783 at 788.298 kb on + strand, within Dshi_0783 at 788.482 kb on - strand, within Dshi_0783 at 788.529 kb on + strand, within Dshi_0783
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 786,014 - Dshi_0780 0.34 +0.4 786,041 - +0.4 786,084 - Dshi_0780 0.41 +0.4 786,180 + Dshi_0780 0.52 +2.7 786,180 + Dshi_0780 0.52 -0.5 786,192 + Dshi_0780 0.53 -0.4 786,194 + Dshi_0780 0.53 -0.7 786,198 - Dshi_0780 0.53 -2.2 786,274 + Dshi_0780 0.61 +0.2 786,362 + Dshi_0780 0.71 +2.7 786,370 - Dshi_0780 0.72 -0.7 786,406 - Dshi_0780 0.75 +2.4 786,523 - Dshi_0780 0.88 +0.4 786,600 + -0.2 786,621 + -1.9 787,008 + +1.8 787,018 + +1.0 787,026 + +0.5 787,081 + Dshi_0782 0.14 -0.1 787,081 + Dshi_0782 0.14 -0.8 787,081 + Dshi_0782 0.14 +0.0 787,175 - Dshi_0782 0.30 -0.0 787,256 - Dshi_0782 0.45 +0.5 787,319 - Dshi_0782 0.56 +0.4 787,319 - Dshi_0782 0.56 +0.1 787,333 + Dshi_0782 0.58 +1.8 787,366 - Dshi_0782 0.64 -0.2 787,385 + Dshi_0782 0.67 -1.3 787,405 - Dshi_0782 0.71 -0.5 787,463 - Dshi_0782 0.81 -0.6 787,563 + -1.1 787,576 - +0.7 787,604 + -3.9 787,606 + -0.6 787,664 + -0.2 787,672 + +1.2 787,733 - -0.2 787,801 - -0.4 787,801 - -0.5 787,850 + +0.4 787,903 - +3.0 787,934 + Dshi_0783 0.11 +1.1 787,941 - Dshi_0783 0.11 -0.1 787,951 + Dshi_0783 0.11 -0.6 788,031 - Dshi_0783 0.14 -1.4 788,076 - Dshi_0783 0.16 -1.3 788,076 - Dshi_0783 0.16 -0.3 788,078 - Dshi_0783 0.16 +2.7 788,102 + Dshi_0783 0.16 +2.0 788,230 + Dshi_0783 0.21 -0.1 788,280 + Dshi_0783 0.22 +0.4 788,298 + Dshi_0783 0.23 -1.6 788,482 - Dshi_0783 0.29 -0.8 788,529 + Dshi_0783 0.31 +1.2
Or see this region's nucleotide sequence