Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0686 and Dshi_0687 are separated by 107 nucleotides Dshi_0687 and Dshi_0688 are separated by 141 nucleotides
Dshi_0686: Dshi_0686 - regulatory protein, putative (RefSeq), at 690,358 to 692,448
_0686
Dshi_0687: Dshi_0687 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 692,556 to 693,332
_0687
Dshi_0688: Dshi_0688 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 693,474 to 694,838
_0688
Position (kb)
692
693
694 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 691.661 kb on - strand, within Dshi_0686 at 691.719 kb on + strand, within Dshi_0686 at 691.719 kb on + strand, within Dshi_0686 at 691.727 kb on - strand, within Dshi_0686 at 691.810 kb on + strand, within Dshi_0686 at 691.810 kb on + strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.837 kb on - strand, within Dshi_0686 at 691.899 kb on + strand, within Dshi_0686 at 691.899 kb on + strand, within Dshi_0686 at 691.913 kb on + strand, within Dshi_0686 at 691.923 kb on + strand, within Dshi_0686 at 691.996 kb on - strand, within Dshi_0686 at 692.196 kb on + strand, within Dshi_0686 at 692.431 kb on + strand at 692.519 kb on + strand at 692.540 kb on + strand at 692.592 kb on + strand at 692.613 kb on - strand at 692.637 kb on + strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.805 kb on + strand, within Dshi_0687 at 692.823 kb on + strand, within Dshi_0687 at 692.956 kb on - strand, within Dshi_0687 at 693.112 kb on + strand, within Dshi_0687 at 693.203 kb on + strand, within Dshi_0687 at 693.232 kb on - strand, within Dshi_0687 at 693.368 kb on - strand at 693.393 kb on + strand at 693.440 kb on + strand at 693.477 kb on + strand at 693.511 kb on - strand at 693.654 kb on - strand, within Dshi_0688 at 693.726 kb on - strand, within Dshi_0688 at 693.761 kb on - strand, within Dshi_0688 at 693.780 kb on - strand at 693.816 kb on + strand, within Dshi_0688 at 693.860 kb on - strand, within Dshi_0688 at 693.969 kb on + strand, within Dshi_0688 at 694.060 kb on - strand, within Dshi_0688 at 694.090 kb on - strand, within Dshi_0688 at 694.112 kb on + strand, within Dshi_0688 at 694.121 kb on + strand, within Dshi_0688 at 694.190 kb on - strand, within Dshi_0688 at 694.241 kb on + strand, within Dshi_0688 at 694.284 kb on - strand, within Dshi_0688 at 694.293 kb on + strand, within Dshi_0688
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 691,661 - Dshi_0686 0.62 -2.3 691,719 + Dshi_0686 0.65 -3.2 691,719 + Dshi_0686 0.65 -0.9 691,727 - Dshi_0686 0.65 -0.7 691,810 + Dshi_0686 0.69 +0.9 691,810 + Dshi_0686 0.69 -0.3 691,818 - Dshi_0686 0.70 -0.3 691,818 - Dshi_0686 0.70 -3.2 691,818 - Dshi_0686 0.70 +1.7 691,837 - Dshi_0686 0.71 -2.7 691,899 + Dshi_0686 0.74 +0.2 691,899 + Dshi_0686 0.74 -0.7 691,913 + Dshi_0686 0.74 -0.9 691,923 + Dshi_0686 0.75 -0.8 691,996 - Dshi_0686 0.78 -0.5 692,196 + Dshi_0686 0.88 -0.1 692,431 + +2.3 692,519 + +1.3 692,540 + -1.0 692,592 + -0.9 692,613 - -1.3 692,637 + Dshi_0687 0.10 -2.9 692,684 - Dshi_0687 0.16 +0.9 692,684 - Dshi_0687 0.16 -0.9 692,805 + Dshi_0687 0.32 +1.0 692,823 + Dshi_0687 0.34 -3.2 692,956 - Dshi_0687 0.51 -0.7 693,112 + Dshi_0687 0.72 -0.5 693,203 + Dshi_0687 0.83 -1.7 693,232 - Dshi_0687 0.87 -2.4 693,368 - -3.0 693,393 + +0.3 693,440 + -1.6 693,477 + -0.7 693,511 - +0.3 693,654 - Dshi_0688 0.13 -1.3 693,726 - Dshi_0688 0.18 -1.0 693,761 - Dshi_0688 0.21 -0.7 693,780 - +1.3 693,816 + Dshi_0688 0.25 -0.4 693,860 - Dshi_0688 0.28 +1.3 693,969 + Dshi_0688 0.36 -1.7 694,060 - Dshi_0688 0.43 -2.3 694,090 - Dshi_0688 0.45 +2.0 694,112 + Dshi_0688 0.47 +1.3 694,121 + Dshi_0688 0.47 -0.7 694,190 - Dshi_0688 0.52 +2.3 694,241 + Dshi_0688 0.56 -1.9 694,284 - Dshi_0688 0.59 +0.3 694,293 + Dshi_0688 0.60 -1.7
Or see this region's nucleotide sequence