Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0667 and Dshi_0668 are separated by 4 nucleotides Dshi_0668 and Dshi_0669 are separated by 87 nucleotides Dshi_0669 and Dshi_0670 are separated by 173 nucleotides
Dshi_0667: Dshi_0667 - heavy metal translocating P-type ATPase (RefSeq), at 671,120 to 673,309
_0667
Dshi_0668: Dshi_0668 - cytochrome oxidase maturation protein, cbb3-type (RefSeq), at 673,314 to 673,472
_0668
Dshi_0669: Dshi_0669 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 673,560 to 675,041
_0669
Dshi_0670: Dshi_0670 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 675,215 to 675,919
_0670
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 672.986 kb on - strand, within Dshi_0667 at 673.338 kb on - strand, within Dshi_0668 at 673.345 kb on + strand, within Dshi_0668 at 673.345 kb on + strand, within Dshi_0668 at 673.588 kb on + strand at 673.919 kb on - strand, within Dshi_0669 at 675.099 kb on + strand at 675.280 kb on + strand at 675.310 kb on + strand, within Dshi_0670 at 675.415 kb on + strand, within Dshi_0670 at 675.438 kb on - strand, within Dshi_0670 at 675.443 kb on + strand, within Dshi_0670 at 675.635 kb on + strand, within Dshi_0670 at 675.643 kb on - strand, within Dshi_0670 at 675.655 kb on + strand, within Dshi_0670 at 675.843 kb on - strand, within Dshi_0670 at 675.899 kb on - strand at 675.935 kb on + strand at 675.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 672,986 - Dshi_0667 0.85 +0.3 673,338 - Dshi_0668 0.15 -2.5 673,345 + Dshi_0668 0.19 +0.3 673,345 + Dshi_0668 0.19 +2.6 673,588 + +1.3 673,919 - Dshi_0669 0.24 -2.5 675,099 + -2.1 675,280 + +0.0 675,310 + Dshi_0670 0.13 -2.3 675,415 + Dshi_0670 0.28 -0.3 675,438 - Dshi_0670 0.32 -1.9 675,443 + Dshi_0670 0.32 -3.8 675,635 + Dshi_0670 0.60 -1.3 675,643 - Dshi_0670 0.61 -0.2 675,655 + Dshi_0670 0.62 -0.3 675,843 - Dshi_0670 0.89 +2.3 675,899 - -0.5 675,935 + -1.2 675,950 - -1.5
Or see this region's nucleotide sequence