Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0653 and Dshi_0654 are separated by 123 nucleotides Dshi_0654 and Dshi_0655 are separated by 250 nucleotides
Dshi_0653: Dshi_0653 - Prephenate dehydratase (RefSeq), at 655,248 to 656,090
_0653
Dshi_0654: Dshi_0654 - cytochrome c class I (RefSeq), at 656,214 to 656,738
_0654
Dshi_0655: Dshi_0655 - extracellular solute-binding protein family 5 (RefSeq), at 656,989 to 658,890
_0655
Position (kb) 656
657 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 655.651 kb on - strand, within Dshi_0653 at 655.753 kb on + strand, within Dshi_0653 at 655.758 kb on + strand, within Dshi_0653 at 655.763 kb on + strand, within Dshi_0653 at 655.767 kb on + strand, within Dshi_0653 at 655.777 kb on + strand, within Dshi_0653 at 655.785 kb on - strand, within Dshi_0653 at 655.799 kb on - strand, within Dshi_0653 at 655.985 kb on - strand, within Dshi_0653 at 655.993 kb on + strand, within Dshi_0653 at 656.273 kb on - strand, within Dshi_0654 at 656.273 kb on - strand, within Dshi_0654 at 656.564 kb on - strand, within Dshi_0654 at 656.588 kb on + strand, within Dshi_0654 at 656.691 kb on + strand at 656.776 kb on - strand at 656.861 kb on + strand at 656.869 kb on - strand at 656.930 kb on + strand at 656.933 kb on - strand at 656.945 kb on - strand at 656.973 kb on + strand at 656.996 kb on + strand at 657.044 kb on + strand at 657.059 kb on + strand at 657.067 kb on - strand at 657.096 kb on + strand at 657.096 kb on + strand at 657.190 kb on - strand, within Dshi_0655 at 657.199 kb on + strand, within Dshi_0655 at 657.262 kb on + strand, within Dshi_0655 at 657.268 kb on - strand, within Dshi_0655 at 657.270 kb on - strand, within Dshi_0655 at 657.270 kb on - strand, within Dshi_0655 at 657.379 kb on - strand, within Dshi_0655 at 657.388 kb on + strand, within Dshi_0655 at 657.388 kb on + strand, within Dshi_0655 at 657.396 kb on - strand, within Dshi_0655 at 657.396 kb on - strand, within Dshi_0655 at 657.403 kb on - strand, within Dshi_0655 at 657.488 kb on - strand, within Dshi_0655 at 657.548 kb on + strand, within Dshi_0655 at 657.634 kb on + strand, within Dshi_0655 at 657.677 kb on - strand, within Dshi_0655 at 657.734 kb on - strand, within Dshi_0655
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 655,651 - Dshi_0653 0.48 +0.2 655,753 + Dshi_0653 0.60 -0.8 655,758 + Dshi_0653 0.60 +2.2 655,763 + Dshi_0653 0.61 -1.2 655,767 + Dshi_0653 0.62 +0.4 655,777 + Dshi_0653 0.63 -0.5 655,785 - Dshi_0653 0.64 -1.3 655,799 - Dshi_0653 0.65 -0.1 655,985 - Dshi_0653 0.87 -0.8 655,993 + Dshi_0653 0.88 +1.1 656,273 - Dshi_0654 0.11 -1.6 656,273 - Dshi_0654 0.11 +0.3 656,564 - Dshi_0654 0.67 -0.5 656,588 + Dshi_0654 0.71 -1.5 656,691 + +0.4 656,776 - +1.0 656,861 + +0.4 656,869 - +2.2 656,930 + -1.5 656,933 - +3.7 656,945 - -0.2 656,973 + +0.8 656,996 + +0.2 657,044 + +3.8 657,059 + +0.9 657,067 - +3.1 657,096 + -0.2 657,096 + +0.2 657,190 - Dshi_0655 0.11 +0.0 657,199 + Dshi_0655 0.11 +0.0 657,262 + Dshi_0655 0.14 -0.2 657,268 - Dshi_0655 0.15 -0.8 657,270 - Dshi_0655 0.15 +0.4 657,270 - Dshi_0655 0.15 +0.1 657,379 - Dshi_0655 0.21 -1.3 657,388 + Dshi_0655 0.21 +0.5 657,388 + Dshi_0655 0.21 -1.6 657,396 - Dshi_0655 0.21 -1.4 657,396 - Dshi_0655 0.21 +1.2 657,403 - Dshi_0655 0.22 +0.6 657,488 - Dshi_0655 0.26 -0.2 657,548 + Dshi_0655 0.29 +0.8 657,634 + Dshi_0655 0.34 -0.1 657,677 - Dshi_0655 0.36 +0.5 657,734 - Dshi_0655 0.39 -0.0
Or see this region's nucleotide sequence