Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0640 and Dshi_0641 are separated by 4 nucleotides Dshi_0641 and Dshi_0642 are separated by 2 nucleotides Dshi_0642 and Dshi_0643 are separated by 10 nucleotides
Dshi_0640: Dshi_0640 - peptidase S49 (RefSeq), at 639,402 to 640,199
_0640
Dshi_0641: Dshi_0641 - hypothetical protein (RefSeq), at 640,204 to 640,374
_0641
Dshi_0642: Dshi_0642 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 640,377 to 641,315
_0642
Dshi_0643: Dshi_0643 - short-chain dehydrogenase/reductase SDR (RefSeq), at 641,326 to 642,117
_0643
Position (kb) 640
641
642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 639.838 kb on + strand, within Dshi_0640 at 639.887 kb on + strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.989 kb on + strand, within Dshi_0640 at 639.997 kb on - strand, within Dshi_0640 at 639.999 kb on + strand, within Dshi_0640 at 640.009 kb on + strand, within Dshi_0640 at 640.093 kb on + strand, within Dshi_0640 at 640.185 kb on + strand at 640.275 kb on + strand, within Dshi_0641 at 640.377 kb on - strand at 640.524 kb on - strand, within Dshi_0642 at 641.098 kb on + strand, within Dshi_0642 at 642.107 kb on + strand at 642.164 kb on + strand at 642.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 639,838 + Dshi_0640 0.55 -2.6 639,887 + Dshi_0640 0.61 -1.6 639,895 - Dshi_0640 0.62 -0.4 639,895 - Dshi_0640 0.62 -1.9 639,895 - Dshi_0640 0.62 +0.8 639,974 + Dshi_0640 0.72 +0.2 639,974 + Dshi_0640 0.72 +0.2 639,974 + Dshi_0640 0.72 +0.2 639,982 - Dshi_0640 0.73 +0.2 639,982 - Dshi_0640 0.73 -1.0 639,989 + Dshi_0640 0.74 +0.2 639,997 - Dshi_0640 0.75 -0.7 639,999 + Dshi_0640 0.75 -1.8 640,009 + Dshi_0640 0.76 -0.2 640,093 + Dshi_0640 0.87 -1.4 640,185 + -3.9 640,275 + Dshi_0641 0.42 +2.1 640,377 - +1.2 640,524 - Dshi_0642 0.16 -0.5 641,098 + Dshi_0642 0.77 +0.2 642,107 + -0.5 642,164 + -0.9 642,170 - +0.2
Or see this region's nucleotide sequence