Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0638 and Dshi_0639 overlap by 4 nucleotides Dshi_0639 and Dshi_0640 are separated by 101 nucleotides Dshi_0640 and Dshi_0641 are separated by 4 nucleotides
Dshi_0638: Dshi_0638 - ABC transporter related (RefSeq), at 637,586 to 638,542
_0638
Dshi_0639: Dshi_0639 - ABC-2 type transporter (RefSeq), at 638,539 to 639,300
_0639
Dshi_0640: Dshi_0640 - peptidase S49 (RefSeq), at 639,402 to 640,199
_0640
Dshi_0641: Dshi_0641 - hypothetical protein (RefSeq), at 640,204 to 640,374
_0641
Position (kb) 638
639
640 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 637.727 kb on - strand, within Dshi_0638 at 637.785 kb on + strand, within Dshi_0638 at 637.813 kb on + strand, within Dshi_0638 at 637.815 kb on + strand, within Dshi_0638 at 638.123 kb on - strand, within Dshi_0638 at 638.183 kb on - strand, within Dshi_0638 at 638.233 kb on - strand, within Dshi_0638 at 638.258 kb on - strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.345 kb on - strand, within Dshi_0638 at 638.347 kb on + strand, within Dshi_0638 at 638.409 kb on - strand, within Dshi_0638 at 638.486 kb on - strand at 638.605 kb on - strand at 638.676 kb on + strand, within Dshi_0639 at 638.722 kb on + strand, within Dshi_0639 at 638.730 kb on - strand, within Dshi_0639 at 638.755 kb on - strand, within Dshi_0639 at 638.814 kb on + strand, within Dshi_0639 at 638.833 kb on + strand, within Dshi_0639 at 638.841 kb on - strand, within Dshi_0639 at 638.919 kb on - strand, within Dshi_0639 at 638.947 kb on + strand, within Dshi_0639 at 638.963 kb on + strand, within Dshi_0639 at 638.968 kb on + strand, within Dshi_0639 at 638.968 kb on + strand, within Dshi_0639 at 638.968 kb on + strand, within Dshi_0639 at 639.098 kb on - strand, within Dshi_0639 at 639.128 kb on + strand, within Dshi_0639 at 639.136 kb on + strand, within Dshi_0639 at 639.144 kb on - strand, within Dshi_0639 at 639.208 kb on + strand, within Dshi_0639 at 639.233 kb on + strand at 639.256 kb on - strand at 639.302 kb on - strand at 639.309 kb on + strand at 639.838 kb on + strand, within Dshi_0640 at 639.887 kb on + strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.989 kb on + strand, within Dshi_0640 at 639.997 kb on - strand, within Dshi_0640 at 639.999 kb on + strand, within Dshi_0640 at 640.009 kb on + strand, within Dshi_0640 at 640.093 kb on + strand, within Dshi_0640 at 640.185 kb on + strand at 640.275 kb on + strand, within Dshi_0641
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 637,727 - Dshi_0638 0.15 +1.2 637,785 + Dshi_0638 0.21 -1.2 637,813 + Dshi_0638 0.24 +2.4 637,815 + Dshi_0638 0.24 -0.9 638,123 - Dshi_0638 0.56 -3.1 638,183 - Dshi_0638 0.62 +0.4 638,233 - Dshi_0638 0.68 -3.1 638,258 - Dshi_0638 0.70 -1.7 638,337 + Dshi_0638 0.78 -1.8 638,337 + Dshi_0638 0.78 -0.1 638,337 + Dshi_0638 0.78 -0.7 638,345 - Dshi_0638 0.79 -0.5 638,347 + Dshi_0638 0.80 +0.6 638,409 - Dshi_0638 0.86 -0.2 638,486 - +1.2 638,605 - -1.6 638,676 + Dshi_0639 0.18 -1.0 638,722 + Dshi_0639 0.24 +1.0 638,730 - Dshi_0639 0.25 -1.9 638,755 - Dshi_0639 0.28 +2.2 638,814 + Dshi_0639 0.36 -0.4 638,833 + Dshi_0639 0.39 +0.8 638,841 - Dshi_0639 0.40 +0.2 638,919 - Dshi_0639 0.50 -0.6 638,947 + Dshi_0639 0.54 -0.9 638,963 + Dshi_0639 0.56 +0.7 638,968 + Dshi_0639 0.56 -3.0 638,968 + Dshi_0639 0.56 -1.7 638,968 + Dshi_0639 0.56 -0.1 639,098 - Dshi_0639 0.73 -1.9 639,128 + Dshi_0639 0.77 -0.8 639,136 + Dshi_0639 0.78 -2.4 639,144 - Dshi_0639 0.79 -1.1 639,208 + Dshi_0639 0.88 -0.4 639,233 + +0.2 639,256 - +1.2 639,302 - -0.7 639,309 + -2.6 639,838 + Dshi_0640 0.55 -2.6 639,887 + Dshi_0640 0.61 -1.6 639,895 - Dshi_0640 0.62 -0.4 639,895 - Dshi_0640 0.62 -1.9 639,895 - Dshi_0640 0.62 +0.8 639,974 + Dshi_0640 0.72 +0.2 639,974 + Dshi_0640 0.72 +0.2 639,974 + Dshi_0640 0.72 +0.2 639,982 - Dshi_0640 0.73 +0.2 639,982 - Dshi_0640 0.73 -1.0 639,989 + Dshi_0640 0.74 +0.2 639,997 - Dshi_0640 0.75 -0.7 639,999 + Dshi_0640 0.75 -1.8 640,009 + Dshi_0640 0.76 -0.2 640,093 + Dshi_0640 0.87 -1.4 640,185 + -3.9 640,275 + Dshi_0641 0.42 +2.1
Or see this region's nucleotide sequence