Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0498

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0496 and Dshi_0497 are separated by 99 nucleotidesDshi_0497 and Dshi_0498 overlap by 4 nucleotidesDshi_0498 and Dshi_0499 overlap by 4 nucleotides Dshi_0496: Dshi_0496 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 480,704 to 482,722 _0496 Dshi_0497: Dshi_0497 - hypothetical protein (RefSeq), at 482,822 to 483,556 _0497 Dshi_0498: Dshi_0498 - hypothetical protein (RefSeq), at 483,553 to 484,110 _0498 Dshi_0499: Dshi_0499 - hypothetical protein (RefSeq), at 484,107 to 485,120 _0499 Position (kb) 483 484 485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 482.558 kb on + strandat 482.564 kb on + strandat 482.564 kb on + strandat 482.564 kb on + strandat 482.606 kb on - strandat 482.612 kb on - strandat 482.637 kb on + strandat 482.689 kb on - strandat 482.695 kb on - strandat 482.755 kb on - strandat 482.769 kb on - strandat 482.776 kb on + strandat 482.776 kb on + strandat 482.776 kb on + strandat 482.776 kb on - strandat 482.784 kb on - strandat 482.784 kb on - strandat 482.784 kb on - strandat 482.816 kb on + strandat 482.824 kb on - strandat 482.859 kb on - strandat 482.871 kb on + strandat 482.879 kb on - strandat 482.895 kb on - strandat 482.900 kb on - strand, within Dshi_0497at 482.922 kb on - strand, within Dshi_0497at 482.934 kb on + strand, within Dshi_0497at 482.939 kb on + strand, within Dshi_0497at 482.961 kb on - strand, within Dshi_0497at 482.996 kb on - strand, within Dshi_0497at 483.001 kb on - strand, within Dshi_0497at 483.059 kb on + strand, within Dshi_0497at 483.094 kb on - strand, within Dshi_0497at 483.176 kb on - strand, within Dshi_0497at 483.205 kb on + strand, within Dshi_0497at 483.226 kb on + strand, within Dshi_0497at 483.274 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on - strand, within Dshi_0497at 483.395 kb on + strand, within Dshi_0497at 483.396 kb on - strand, within Dshi_0497at 483.398 kb on + strand, within Dshi_0497at 483.403 kb on + strand, within Dshi_0497at 483.424 kb on - strand, within Dshi_0497at 483.429 kb on - strand, within Dshi_0497at 483.436 kb on + strand, within Dshi_0497at 483.436 kb on - strand, within Dshi_0497at 483.545 kb on - strandat 483.569 kb on + strandat 483.620 kb on + strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.755 kb on + strand, within Dshi_0498at 483.758 kb on - strand, within Dshi_0498at 483.813 kb on - strand, within Dshi_0498at 483.906 kb on + strand, within Dshi_0498at 483.915 kb on - strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.974 kb on + strand, within Dshi_0498at 483.974 kb on + strand, within Dshi_0498at 483.974 kb on - strand, within Dshi_0498at 483.974 kb on - strand, within Dshi_0498at 483.976 kb on + strand, within Dshi_0498at 483.982 kb on - strand, within Dshi_0498at 483.982 kb on - strand, within Dshi_0498at 484.044 kb on + strand, within Dshi_0498at 484.053 kb on - strand, within Dshi_0498at 484.066 kb on + strandat 484.066 kb on + strandat 484.067 kb on + strandat 484.068 kb on - strandat 484.101 kb on + strandat 484.115 kb on + strandat 484.115 kb on + strandat 484.115 kb on + strandat 484.156 kb on - strandat 484.183 kb on + strandat 484.191 kb on - strandat 484.227 kb on + strand, within Dshi_0499at 484.245 kb on - strand, within Dshi_0499at 484.268 kb on + strand, within Dshi_0499at 484.323 kb on + strand, within Dshi_0499at 484.373 kb on + strand, within Dshi_0499at 484.378 kb on + strand, within Dshi_0499at 484.378 kb on - strand, within Dshi_0499at 484.401 kb on + strand, within Dshi_0499at 484.402 kb on + strand, within Dshi_0499at 484.402 kb on + strand, within Dshi_0499at 484.405 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.415 kb on + strand, within Dshi_0499at 484.458 kb on + strand, within Dshi_0499at 484.467 kb on + strand, within Dshi_0499at 484.480 kb on - strand, within Dshi_0499at 484.497 kb on + strand, within Dshi_0499at 484.501 kb on + strand, within Dshi_0499at 484.508 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.526 kb on - strand, within Dshi_0499at 484.549 kb on + strand, within Dshi_0499at 484.566 kb on - strand, within Dshi_0499at 484.571 kb on - strand, within Dshi_0499at 484.576 kb on - strand, within Dshi_0499at 484.592 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.657 kb on + strand, within Dshi_0499at 484.662 kb on + strand, within Dshi_0499at 484.665 kb on - strand, within Dshi_0499at 484.665 kb on - strand, within Dshi_0499at 484.690 kb on - strand, within Dshi_0499at 484.690 kb on - strand, within Dshi_0499at 484.693 kb on + strand, within Dshi_0499at 484.702 kb on + strand, within Dshi_0499at 484.718 kb on - strand, within Dshi_0499at 484.727 kb on + strand, within Dshi_0499at 484.735 kb on - strand, within Dshi_0499at 484.738 kb on - strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.742 kb on + strand, within Dshi_0499at 484.742 kb on + strand, within Dshi_0499at 484.749 kb on - strand, within Dshi_0499at 484.750 kb on - strand, within Dshi_0499at 484.758 kb on + strand, within Dshi_0499at 484.758 kb on + strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.789 kb on - strand, within Dshi_0499at 484.799 kb on + strand, within Dshi_0499at 484.799 kb on - strand, within Dshi_0499at 484.805 kb on + strand, within Dshi_0499at 484.813 kb on + strand, within Dshi_0499at 484.813 kb on + strand, within Dshi_0499at 484.821 kb on - strand, within Dshi_0499at 484.821 kb on - strand, within Dshi_0499at 484.831 kb on - strand, within Dshi_0499at 484.831 kb on - strand, within Dshi_0499at 484.840 kb on + strand, within Dshi_0499at 484.868 kb on + strand, within Dshi_0499at 484.876 kb on - strand, within Dshi_0499at 484.879 kb on + strand, within Dshi_0499at 484.887 kb on - strand, within Dshi_0499at 484.887 kb on - strand, within Dshi_0499at 484.984 kb on - strand, within Dshi_0499at 485.013 kb on + strand, within Dshi_0499at 485.023 kb on + strandat 485.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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482,558 + -0.6
482,564 + +0.8
482,564 + -0.9
482,564 + +1.5
482,606 - -0.7
482,612 - -0.7
482,637 + +1.0
482,689 - -0.4
482,695 - +0.9
482,755 - -3.1
482,769 - -2.9
482,776 + -1.5
482,776 + +0.5
482,776 + +0.7
482,776 - -1.0
482,784 - -1.5
482,784 - -0.8
482,784 - +2.3
482,816 + -0.7
482,824 - -0.3
482,859 - -1.1
482,871 + +0.6
482,879 - +0.1
482,895 - -0.8
482,900 - Dshi_0497 0.11 -0.7
482,922 - Dshi_0497 0.14 -0.6
482,934 + Dshi_0497 0.15 -0.3
482,939 + Dshi_0497 0.16 +0.9
482,961 - Dshi_0497 0.19 +0.6
482,996 - Dshi_0497 0.24 +1.5
483,001 - Dshi_0497 0.24 -0.1
483,059 + Dshi_0497 0.32 +0.6
483,094 - Dshi_0497 0.37 +0.5
483,176 - Dshi_0497 0.48 +2.1
483,205 + Dshi_0497 0.52 -1.4
483,226 + Dshi_0497 0.55 -1.2
483,274 + Dshi_0497 0.61 -0.5
483,344 + Dshi_0497 0.71 +1.1
483,344 + Dshi_0497 0.71 +1.1
483,344 - Dshi_0497 0.71 -0.3
483,395 + Dshi_0497 0.78 +1.4
483,396 - Dshi_0497 0.78 +0.2
483,398 + Dshi_0497 0.78 +0.9
483,403 + Dshi_0497 0.79 +1.3
483,424 - Dshi_0497 0.82 +0.7
483,429 - Dshi_0497 0.83 -0.4
483,436 + Dshi_0497 0.84 -1.3
483,436 - Dshi_0497 0.84 -0.5
483,545 - +2.1
483,569 + -0.7
483,620 + Dshi_0498 0.12 +2.8
483,628 - Dshi_0498 0.13 -0.7
483,628 - Dshi_0498 0.13 +0.4
483,755 + Dshi_0498 0.36 +0.2
483,758 - Dshi_0498 0.37 +0.4
483,813 - Dshi_0498 0.47 -0.4
483,906 + Dshi_0498 0.63 +0.4
483,915 - Dshi_0498 0.65 +0.8
483,966 + Dshi_0498 0.74 -0.5
483,966 + Dshi_0498 0.74 +0.2
483,966 + Dshi_0498 0.74 -0.5
483,966 + Dshi_0498 0.74 +1.1
483,966 + Dshi_0498 0.74 -0.7
483,974 + Dshi_0498 0.75 -1.0
483,974 + Dshi_0498 0.75 -0.5
483,974 - Dshi_0498 0.75 -0.9
483,974 - Dshi_0498 0.75 +0.3
483,976 + Dshi_0498 0.76 +2.1
483,982 - Dshi_0498 0.77 -1.5
483,982 - Dshi_0498 0.77 -1.4
484,044 + Dshi_0498 0.88 -0.9
484,053 - Dshi_0498 0.90 +0.3
484,066 + -0.7
484,066 + -0.6
484,067 + -0.1
484,068 - +0.7
484,101 + +0.7
484,115 + -1.5
484,115 + +0.5
484,115 + -0.6
484,156 - +0.5
484,183 + -0.0
484,191 - -0.3
484,227 + Dshi_0499 0.12 -0.7
484,245 - Dshi_0499 0.14 +0.5
484,268 + Dshi_0499 0.16 -0.8
484,323 + Dshi_0499 0.21 +0.3
484,373 + Dshi_0499 0.26 +1.3
484,378 + Dshi_0499 0.27 -0.3
484,378 - Dshi_0499 0.27 -1.1
484,401 + Dshi_0499 0.29 -1.1
484,402 + Dshi_0499 0.29 +0.3
484,402 + Dshi_0499 0.29 -0.4
484,405 - Dshi_0499 0.29 -0.1
484,407 - Dshi_0499 0.30 -0.6
484,407 - Dshi_0499 0.30 +2.5
484,407 - Dshi_0499 0.30 +0.3
484,415 + Dshi_0499 0.30 -0.5
484,458 + Dshi_0499 0.35 +1.3
484,467 + Dshi_0499 0.36 +2.3
484,480 - Dshi_0499 0.37 -0.5
484,497 + Dshi_0499 0.38 -1.0
484,501 + Dshi_0499 0.39 +0.3
484,508 - Dshi_0499 0.40 +0.8
484,509 - Dshi_0499 0.40 -0.7
484,509 - Dshi_0499 0.40 +0.1
484,509 - Dshi_0499 0.40 +0.2
484,509 - Dshi_0499 0.40 +1.5
484,526 - Dshi_0499 0.41 +0.9
484,549 + Dshi_0499 0.44 +1.2
484,566 - Dshi_0499 0.45 +1.5
484,571 - Dshi_0499 0.46 -0.5
484,576 - Dshi_0499 0.46 -0.9
484,592 - Dshi_0499 0.48 -0.3
484,655 - Dshi_0499 0.54 +2.5
484,655 - Dshi_0499 0.54 -1.1
484,655 - Dshi_0499 0.54 +0.4
484,657 + Dshi_0499 0.54 -0.1
484,662 + Dshi_0499 0.55 -0.6
484,665 - Dshi_0499 0.55 +0.6
484,665 - Dshi_0499 0.55 -0.4
484,690 - Dshi_0499 0.57 -1.0
484,690 - Dshi_0499 0.57 +0.8
484,693 + Dshi_0499 0.58 +2.4
484,702 + Dshi_0499 0.59 +0.4
484,718 - Dshi_0499 0.60 -0.3
484,727 + Dshi_0499 0.61 -0.3
484,735 - Dshi_0499 0.62 -0.3
484,738 - Dshi_0499 0.62 -0.5
484,741 + Dshi_0499 0.63 -0.7
484,741 + Dshi_0499 0.63 -2.2
484,741 + Dshi_0499 0.63 +2.9
484,742 + Dshi_0499 0.63 -0.8
484,742 + Dshi_0499 0.63 -0.3
484,749 - Dshi_0499 0.63 +0.2
484,750 - Dshi_0499 0.63 -0.4
484,758 + Dshi_0499 0.64 +2.3
484,758 + Dshi_0499 0.64 -1.3
484,766 - Dshi_0499 0.65 -1.1
484,766 - Dshi_0499 0.65 -0.5
484,766 - Dshi_0499 0.65 -0.2
484,789 - Dshi_0499 0.67 -0.5
484,799 + Dshi_0499 0.68 -0.3
484,799 - Dshi_0499 0.68 -0.7
484,805 + Dshi_0499 0.69 -0.6
484,813 + Dshi_0499 0.70 -2.9
484,813 + Dshi_0499 0.70 -0.1
484,821 - Dshi_0499 0.70 +3.9
484,821 - Dshi_0499 0.70 -0.5
484,831 - Dshi_0499 0.71 -0.0
484,831 - Dshi_0499 0.71 -1.4
484,840 + Dshi_0499 0.72 +1.1
484,868 + Dshi_0499 0.75 +1.3
484,876 - Dshi_0499 0.76 -0.9
484,879 + Dshi_0499 0.76 +1.1
484,887 - Dshi_0499 0.77 +0.1
484,887 - Dshi_0499 0.77 -1.1
484,984 - Dshi_0499 0.86 +2.4
485,013 + Dshi_0499 0.89 +0.3
485,023 + -0.1
485,029 + +0.6

Or see this region's nucleotide sequence