Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0493

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0491 and Dshi_0492 are separated by 58 nucleotidesDshi_0492 and Dshi_0493 overlap by 4 nucleotidesDshi_0493 and Dshi_0494 overlap by 4 nucleotides Dshi_0491: Dshi_0491 - putative sulfonate/nitrate transport system substrate-binding protein (RefSeq), at 476,139 to 477,122 _0491 Dshi_0492: Dshi_0492 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 477,181 to 478,005 _0492 Dshi_0493: Dshi_0493 - ABC transporter related (RefSeq), at 478,002 to 478,751 _0493 Dshi_0494: Dshi_0494 - NnrS family protein (RefSeq), at 478,748 to 480,028 _0494 Position (kb) 478 479Strain fitness (log2 ratio) -2 -1 0 1 2 3at 477.003 kb on - strand, within Dshi_0491at 477.072 kb on + strandat 477.086 kb on + strandat 477.091 kb on + strandat 477.139 kb on + strandat 477.147 kb on - strandat 477.172 kb on + strandat 477.182 kb on + strandat 477.224 kb on - strandat 477.241 kb on + strandat 477.251 kb on + strandat 477.255 kb on - strandat 477.341 kb on + strand, within Dshi_0492at 477.363 kb on + strand, within Dshi_0492at 477.372 kb on - strand, within Dshi_0492at 477.425 kb on + strand, within Dshi_0492at 477.469 kb on - strand, within Dshi_0492at 477.507 kb on - strandat 477.522 kb on + strand, within Dshi_0492at 477.525 kb on - strand, within Dshi_0492at 477.569 kb on - strand, within Dshi_0492at 477.596 kb on + strand, within Dshi_0492at 477.618 kb on + strand, within Dshi_0492at 477.645 kb on + strand, within Dshi_0492at 477.669 kb on + strand, within Dshi_0492at 477.722 kb on - strand, within Dshi_0492at 477.766 kb on + strand, within Dshi_0492at 477.785 kb on + strand, within Dshi_0492at 477.888 kb on - strand, within Dshi_0492at 477.888 kb on - strand, within Dshi_0492at 477.900 kb on - strand, within Dshi_0492at 477.907 kb on + strand, within Dshi_0492at 477.910 kb on + strand, within Dshi_0492at 477.936 kb on + strandat 477.944 kb on - strandat 477.979 kb on + strandat 477.979 kb on + strandat 477.979 kb on + strandat 477.987 kb on - strandat 477.987 kb on - strandat 478.016 kb on + strandat 478.019 kb on + strandat 478.045 kb on + strandat 478.046 kb on - strandat 478.103 kb on + strand, within Dshi_0493at 478.111 kb on - strand, within Dshi_0493at 478.163 kb on + strand, within Dshi_0493at 478.171 kb on - strand, within Dshi_0493at 478.171 kb on - strand, within Dshi_0493at 478.240 kb on - strand, within Dshi_0493at 478.283 kb on + strand, within Dshi_0493at 478.376 kb on + strand, within Dshi_0493at 478.538 kb on + strand, within Dshi_0493at 478.538 kb on + strand, within Dshi_0493at 478.546 kb on + strand, within Dshi_0493at 478.546 kb on - strand, within Dshi_0493at 478.554 kb on - strand, within Dshi_0493at 478.554 kb on - strand, within Dshi_0493at 478.652 kb on - strand, within Dshi_0493at 478.668 kb on + strand, within Dshi_0493at 478.676 kb on - strand, within Dshi_0493at 478.679 kb on + strandat 478.679 kb on + strandat 478.726 kb on - strandat 478.726 kb on - strandat 478.755 kb on - strandat 478.859 kb on + strandat 479.059 kb on + strand, within Dshi_0494at 479.059 kb on + strand, within Dshi_0494at 479.067 kb on - strand, within Dshi_0494at 479.079 kb on + strand, within Dshi_0494at 479.244 kb on - strand, within Dshi_0494at 479.244 kb on - strand, within Dshi_0494at 479.326 kb on - strand, within Dshi_0494at 479.337 kb on + strand, within Dshi_0494at 479.414 kb on + strand, within Dshi_0494at 479.468 kb on + strand, within Dshi_0494at 479.492 kb on + strand, within Dshi_0494at 479.500 kb on - strand, within Dshi_0494at 479.500 kb on - strand, within Dshi_0494at 479.526 kb on + strand, within Dshi_0494at 479.624 kb on - strand, within Dshi_0494at 479.651 kb on + strand, within Dshi_0494at 479.668 kb on + strand, within Dshi_0494at 479.714 kb on - strand, within Dshi_0494at 479.723 kb on + strand, within Dshi_0494

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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477,003 - Dshi_0491 0.88 +0.6
477,072 + +0.9
477,086 + +0.6
477,091 + -2.1
477,139 + -0.1
477,147 - +0.4
477,172 + -1.3
477,182 + -1.4
477,224 - -1.2
477,241 + -1.6
477,251 + -1.6
477,255 - -0.4
477,341 + Dshi_0492 0.19 +0.4
477,363 + Dshi_0492 0.22 +1.4
477,372 - Dshi_0492 0.23 -0.4
477,425 + Dshi_0492 0.30 -0.8
477,469 - Dshi_0492 0.35 +2.8
477,507 - +2.5
477,522 + Dshi_0492 0.41 -0.6
477,525 - Dshi_0492 0.42 +0.5
477,569 - Dshi_0492 0.47 +1.2
477,596 + Dshi_0492 0.50 +0.8
477,618 + Dshi_0492 0.53 +0.2
477,645 + Dshi_0492 0.56 -0.5
477,669 + Dshi_0492 0.59 +0.2
477,722 - Dshi_0492 0.66 +3.1
477,766 + Dshi_0492 0.71 +0.2
477,785 + Dshi_0492 0.73 +2.5
477,888 - Dshi_0492 0.86 +0.2
477,888 - Dshi_0492 0.86 +2.9
477,900 - Dshi_0492 0.87 +0.8
477,907 + Dshi_0492 0.88 +0.1
477,910 + Dshi_0492 0.88 +0.7
477,936 + +0.1
477,944 - +0.7
477,979 + +2.3
477,979 + -0.1
477,979 + +0.2
477,987 - -1.1
477,987 - +0.2
478,016 + +0.1
478,019 + +0.5
478,045 + -0.8
478,046 - +0.5
478,103 + Dshi_0493 0.13 +1.9
478,111 - Dshi_0493 0.15 +1.1
478,163 + Dshi_0493 0.21 -1.0
478,171 - Dshi_0493 0.23 -0.5
478,171 - Dshi_0493 0.23 -1.1
478,240 - Dshi_0493 0.32 -0.3
478,283 + Dshi_0493 0.37 +1.2
478,376 + Dshi_0493 0.50 +0.2
478,538 + Dshi_0493 0.71 +0.5
478,538 + Dshi_0493 0.71 +0.1
478,546 + Dshi_0493 0.73 -0.4
478,546 - Dshi_0493 0.73 -1.4
478,554 - Dshi_0493 0.74 -0.3
478,554 - Dshi_0493 0.74 -0.8
478,652 - Dshi_0493 0.87 +1.4
478,668 + Dshi_0493 0.89 +0.5
478,676 - Dshi_0493 0.90 +0.1
478,679 + -0.6
478,679 + +3.1
478,726 - +2.8
478,726 - +0.8
478,755 - -0.1
478,859 + -1.3
479,059 + Dshi_0494 0.24 +0.3
479,059 + Dshi_0494 0.24 +0.1
479,067 - Dshi_0494 0.25 +0.7
479,079 + Dshi_0494 0.26 -0.9
479,244 - Dshi_0494 0.39 -0.6
479,244 - Dshi_0494 0.39 +1.5
479,326 - Dshi_0494 0.45 -1.4
479,337 + Dshi_0494 0.46 +2.5
479,414 + Dshi_0494 0.52 +2.5
479,468 + Dshi_0494 0.56 +0.3
479,492 + Dshi_0494 0.58 +1.8
479,500 - Dshi_0494 0.59 -0.4
479,500 - Dshi_0494 0.59 -0.7
479,526 + Dshi_0494 0.61 -1.2
479,624 - Dshi_0494 0.68 -1.4
479,651 + Dshi_0494 0.70 +3.0
479,668 + Dshi_0494 0.72 +1.9
479,714 - Dshi_0494 0.75 -1.5
479,723 + Dshi_0494 0.76 +0.8

Or see this region's nucleotide sequence